derfinder basic results exploration

Project: run3-v1.0.10.

Introduction

This report is meant to help explore the results of the derfinder (Collado-Torres, Frazee, Jaffe, and Leek, 2014) package and was generated using regionReport (Collado-Torres, Jaffe, and Leek, 2014) package. While the report is rich, it is meant to just start the exploration of the results and exemplify some of the code used to do so. You will most likely need a more in-depth analysis for your specific data set.

Most plots were made with using ggplot2 (Wickham, 2009).

Code setup

#### Libraries needed

## Bioconductor
library('IRanges')
library('GenomicRanges')
library('GenomeInfoDb')

if(hg19) {
    library('biovizBase')
    library('TxDb.Hsapiens.UCSC.hg19.knownGene')
}

## CRAN
library('ggplot2')
library('grid')
library('gridExtra')
library('knitr')
library('RColorBrewer')
library('mgcv')
## Loading required package: nlme
## 
## Attaching package: 'nlme'
## 
## The following object is masked from 'package:IRanges':
## 
##     collapse
## 
## This is mgcv 1.8-3. For overview type 'help("mgcv-package")'.
## GitHub
library('derfinder')

## Working behind the scenes
# library('knitcitations')
# library('rmarkdown')
# library('knitrBootstrap')

#### Code setup

## For ggplot
tmp <- fullRegions
names(tmp) <- seq_len(length(tmp))
regions.df <- as.data.frame(tmp)
regions.df$width <- width(tmp)
rm(tmp)
nulls.df <- as.data.frame(fullNullSummary)

## Special subsets: need at least 3 points for a density plot
keepChr <- table(regions.df$seqnames) > 2
regions.df.plot <- subset(regions.df, seqnames %in% names(keepChr[keepChr]))

if(hasSig) {
    ## Keep only those sig
    regions.df.sig <- regions.df[idx.sig, ]
    keepChr <- table(regions.df.sig$seqnames) > 2
    regions.df.sig <- subset(regions.df.sig, seqnames %in% names(keepChr[keepChr]))
    
    if(nrow(regions.df.sig) > 0) {
        ## If there's any sig, keep those with finite areas
        if(hasArea) {
            finite.area.sig <- which(is.finite(regions.df.sig$area))
            
            regions.df.sig.area <- regions.df.sig[finite.area.sig, ]
            keepChr <- table(regions.df.sig.area$seqnames) > 2
            regions.df.sig.area <- subset(regions.df.sig.area, seqnames %in%
                names(keepChr[keepChr]))
            
            ## Save the info
            hasArea <- (nrow(regions.df.sig.area) > 0)
        }
    } else {
        hasSig <- hasArea <- FALSE
    }
}

## Get chr lengths
if(hg19) {
    data(hg19Ideogram, package = 'biovizBase')
    seqlengths(fullRegions) <- seqlengths(hg19Ideogram)[mapSeqlevels(names(seqlengths(fullRegions)),
         'UCSC')]
}

## Find which chrs are present in the data set
chrs <- levels(seqnames(fullRegions))

## Subset the fullCoverage data in case that a subset was used
colsubset <- optionsStats$colsubset
if(!is.null(fullCov) & !is.null(colsubset)) {
    fullCov <- lapply(fullCov, function(x) { x[, colsubset] })
}

## Get region coverage for the top regions
if(nBestRegions > 0) {
    if(packageVersion('derfinder') >= '0.0.60') {
        regionCoverage <- getRegionCoverage(fullCov = fullCov, 
            regions = fullRegions[seq_len(nBestRegions)],
            chrsStyle = chrsStyle, species = species,
            currentStyle = currentStyle, verbose = FALSE)
    } else {
        regionCoverage <- getRegionCoverage(fullCov = fullCov, 
            regions = fullRegions[seq_len(nBestRegions)],
            verbose = FALSE)
    }
    
    save(regionCoverage, file=file.path(workingDir, 'regionCoverage.Rdata'))
}

## Graphical setup: transcription database
if(hg19 & is.null(txdb)) {
    txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
} else {
    stopifnot(!is.null(txdb))
}

Quality checks

P-values

Theoretically, the p-values should be uniformly distributed between 0 and 1.

p1 <- ggplot(regions.df.plot, aes(x=pvalues, colour=seqnames)) +
    geom_line(stat='density') + xlim(0, 1) +
    labs(title='Density of p-values') + xlab('p-values') +
    scale_colour_discrete(limits=chrs) + theme(legend.title=element_blank())
p1
## Compare the pvalues
summary(fullRegions$pvalues)
##      Min.   1st Qu.    Median      Mean   3rd Qu.      Max. 
## 0.0000002 0.1731000 0.4514000 0.4689000 0.7665000 1.0000000

This is the numerical summary of the distribution of the p-values.

Q-values

summary(fullRegions$qvalues)
##     Min.  1st Qu.   Median     Mean  3rd Qu.     Max. 
## 0.002418 0.691300 0.902700 0.800000 1.000000 1.000000

This is the numerical summary of the distribution of the q-values.

qtable <- lapply(c(1e-04, 0.001, 0.01, 0.025, 0.05, 0.1, 0.2, 0.3, 0.4, 0.5,
    0.6, 0.7, 0.8, 0.9, 1), function(x) {
    data.frame('Cut' = x, 'Count' = sum(fullRegions$qvalues <= x))
})
qtable <- do.call(rbind, qtable)
kable(qtable, format = 'html', align = c('c', 'c'))
Cut Count
0.0001 0
0.0010 0
0.0100 96
0.0250 162
0.0500 276
0.1000 507
0.2000 1062
0.3000 1451
0.4000 2202
0.5000 2541
0.6000 3408
0.7000 5342
0.8000 7509
0.9000 9973
1.0000 20145

This table shows the number of candidate Differentially Expressed Regions (DERs) with q-value less or equal than some commonly used cutoff values.

FWER adjusted P-values

summary(fullRegions$fwer)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.0100  1.0000  1.0000  0.9839  1.0000  1.0000

This is the numerical summary of the distribution of the q-values.

fwertable <- lapply(c(1e-04, 0.001, 0.01, 0.025, 0.05, 0.1, 0.2, 0.3, 0.4, 0.5,
    0.6, 0.7, 0.8, 0.9, 1), function(x) {
    data.frame('Cut' = x, 'Count' = sum(fullRegions$fwer <= x))
})
fwertable <- do.call(rbind, fwertable)
kable(fwertable, format = 'html', align = c('c', 'c'))
Cut Count
0.0001 0
0.0010 0
0.0100 1
0.0250 1
0.0500 12
0.1000 25
0.2000 58
0.3000 90
0.4000 119
0.5000 236
0.6000 361
0.7000 470
0.8000 559
0.9000 753
1.0000 20145

This table shows the number of candidate Differentially Expressed Regions (DERs) with FWER adjusted p-values less or equal than some commonly used cutoff values.

Region width

xrange <- range(log10(regions.df.plot$width))
p2a <- ggplot(regions.df.plot, aes(x=log10(width), colour=seqnames)) + 
    geom_line(stat='density') + labs(title='Density of region lengths') +
    xlab('Region width (log10)') + scale_colour_discrete(limits=chrs) +
    xlim(xrange) + theme(legend.title=element_blank())
p2b <- ggplot(regions.df.sig, aes(x=log10(width), colour=seqnames)) +
    geom_line(stat='density') +
    labs(title='Density of region lengths (significant only)') +
    xlab('Region width (log10)') + scale_colour_discrete(limits=chrs) +
    xlim(xrange) + theme(legend.title=element_blank())
grid.arrange(p2a, p2b)

This plot shows the density of the region lengths for all regions. The bottom panel is restricted to significant regions (q-value < 0.1)

Region Area

xrange <- range(log10(regions.df.plot$area[finite.area]))
if(inf.area > 0) {
    print(paste('Dropping', inf.area, 'due to Inf values.'))
}
p3a <- ggplot(regions.df[finite.area, ], aes(x=log10(area), colour=seqnames)) +
    geom_line(stat='density') + labs(title='Density of region areas') +
    xlab('Region area (log10)') + scale_colour_discrete(limits=chrs) +
    xlim(xrange) + theme(legend.title=element_blank())
p3b <- ggplot(regions.df.sig.area, aes(x=log10(area), colour=seqnames)) +
    geom_line(stat='density') +
    labs(title='Density of region areas (significant only)') +
    xlab('Region area (log10)') + scale_colour_discrete(limits=chrs) +
    xlim(xrange) + theme(legend.title=element_blank())
grid.arrange(p3a, p3b)

This plot shows the density of the region areas for all regions. The bottom panel is restricted to significant regions (q-value < 0.1)

Null regions: width and area

p4 <- ggplot(nulls.df, aes(x=log10(width), colour=chr)) +
    geom_line(stat='density') + labs(title='Density of null region lengths') +
    xlab('Region width (log10)') + scale_colour_discrete(limits=chrs) +
    theme(legend.title=element_blank())
nulls.inf <- !is.finite(nulls.df$area)
if(sum(nulls.inf) > 0) {
    print(paste('Dropping', sum(nulls.inf), 'due to Inf values.'))
}
p5 <- ggplot(nulls.df[!nulls.inf, ], aes(x=log10(area), colour=chr)) +
    geom_line(stat='density') + labs(title='Density of null region areas') +
    xlab('Region area (log10)') + scale_colour_discrete(limits=chrs) +
    theme(legend.title=element_blank())
grid.arrange(p4, p5)

This plot shows the density of the null region lengths and areas. There were a total of 12329274 null regions.

Mean coverage

xrange <- range(log2(regions.df.plot$meanCoverage))
p6a <- ggplot(regions.df.plot, aes(x=log2(meanCoverage), colour=seqnames)) +
    geom_line(stat='density') + labs(title='Density of region mean coverage') +
    xlab('Region mean coverage (log2)') + scale_colour_discrete(limits=chrs) +
    xlim(xrange) + theme(legend.title=element_blank())
p6b <- ggplot(regions.df.sig, aes(x=log2(meanCoverage), colour=seqnames)) +
    geom_line(stat='density') +
    labs(title='Density of region mean coverage (significant only)') +
    xlab('Region mean coverage (log2)') + scale_colour_discrete(limits=chrs) +
    xlim(xrange) + theme(legend.title=element_blank())
grid.arrange(p6a, p6b)

This plot shows the density of the region mean coverage for all regions. The bottom panel is restricted to significant regions (q-value < 0.1)

Mean coverage vs fold change

The following plots are MA-style plots comparing each group vs the first one. The mean coverage is calculated using only two groups at a time and is weighted according to the number of samples on each group. Note that the mean coverage and fold change as calculated here do not taking into account the library sizes.

These plots are only shown when there are two or more groups. A total of 3 plot(s) were made.

for(j in grep('log2FoldChange', colnames(values(fullRegions)))) {
    ## Identify the groups
    groups <- strsplit(gsub('log2FoldChange', '',
        colnames(values(fullRegions))[j]), 'vs')[[1]]
    
    ## Calculate the mean coverage only using the 2 groups in question
    j.mean <- which(colnames(values(fullRegions)) %in% paste0('mean', groups))
    groups.n <- sapply(groups, function(x) { sum(optionsStats$groupInfo == x) })
    ma.mean.mat <- as.matrix(values(fullRegions)[, j.mean])
    ## Weighted means
    ma.mean <- drop(ma.mean.mat %*% groups.n) / sum(groups.n) +
        optionsStats$scalefac
    ma.fold2 <- drop(log2(ma.mean.mat + optionsStats$scalefac) %*% c(1, -1))
    
    ma <- data.frame(mean=ma.mean, log2FoldChange=ma.fold2)
    ma2 <- ma[is.finite(ma$log2FoldChange), ]
    fold.mean <- data.frame(foldMean=mean(ma2$log2FoldChange, na.rm=TRUE))
    
    p.ma <- ggplot(ma, aes(x=log2(mean), y=log2FoldChange)) +
        geom_point(size=1.5, alpha=1/5) + 
        ylab("Fold Change [log2(x + sf)]\nRed dashed line at mean; blue line is GAM fit: y ~ s(x, bs = 'cs')") +
        xlab(paste('Mean coverage [log2(x + sf)] using only groups', groups[1], 'and',
            groups[2])) + labs(title=paste('MA style plot:', groups[1], 'vs ', 
            groups[2])) + geom_hline(aes(yintercept=foldMean), data=fold.mean, 
            colour='#990000', linetype='dashed') +
        geom_smooth(aes(y=log2FoldChange, x=log2(mean)), data=subset(ma2,
            mean > 0), method = 'gam', formula = y ~ s(x, bs = 'cs'))
    print(p.ma)
}

Genomic overview

The following plots were made using ggbio (Yin, Cook, and Lawrence, 2012) which in turn uses ggplot2 (Wickham, 2009). For more details check plotOverview in derfinder (Collado-Torres, Frazee, Jaffe, and Leek, 2014).

Q-values

plotOverview(regions=fullRegions, type='qval', base_size=overviewParams$base_size, areaRel=overviewParams$areaRel, legend.position=c(0.97, 0.12))

This plot shows the genomic locations of the candidate regions found in the analysis. The significant regions (q-value less than 0.1) are highlighted and the area of the regions is shown on top of each chromosome. Note that the area is in a relative scale.

Annotation

plotOverview(regions=fullRegions, annotation=fullRegions, type='annotation', base_size=overviewParams$base_size, areaRel=overviewParams$areaRel, legend.position=c(0.97, 0.12))

This genomic overview plot shows the annotation region type for the candidate regions. Note that the regions are shown only if the annotation information is available. Below is a table of the actual number of results per annotation region type.

annoReg <- table(fullRegions$region, useNA='always')
annoReg.df <- data.frame(Region=names(annoReg), Count=as.vector(annoReg))
kable(annoReg.df, format = 'html', align=rep('c', 3))
Region Count
upstream 1387
promoter 341
overlaps 5' 17
inside 13483
overlaps 3' 11
close to 3' 22
downstream 2189
covers 0
NA 2695

Annotation (significant)

plotOverview(regions=fullRegions[idx.sig], annotation=fullRegions[idx.sig], type='annotation', base_size=overviewParams$base_size, areaRel=overviewParams$areaRel, legend.position=c(0.97, 0.12))

This genomic overview plot shows the annotation region type for the candidate regions that have a q-value less than 0.1. Note that the regions are shown only if the annotation information is available.

Best regions

Plots

Below are the plots for the top 100 candidate DERs as ranked by area. For each plot, annotation is shown if the candidate DER has a minimum overlap of 20 base pairs with annotation information (strand specific). If present, exons are collapsed and shown in blue. Introns are shown in light blue. The title of each plot is composed of the name of the nearest annotation element, the distance to it, and whether the region of the genome the DER falls into; all three pieces of information are based on bumphunter::annotateNearest().

The annotation depends on the Genomic State used. For details on which one was used for this report check the call to mergeResults in the reproducibility details.

if(nBestRegions > 0) {
    plotRegionCoverage(regions = fullRegions, regionCoverage = regionCoverage,
        groupInfo = optionsStats$groupInfo, nearestAnnotation = regions.df,
        annotatedRegions = fullAnnotatedRegions, 
        whichRegions = seq_len(min(nBestRegions, length(fullRegions))),
        colors = NULL, scalefac = optionsStats$scalefac, ask = FALSE, 
        verbose = TRUE, txdb = txdb) 
}
## 2014-11-24 16:54:27 plotRegionCoverage: extracting Tx info
## 2014-11-24 16:54:35 plotRegionCoverage: getting Tx plot info

Below is a table summarizing the number of genomic states per region.

info <- do.call(rbind, lapply(fullAnnotatedRegions$countTable, function(x) { data.frame(table(x)) }))
colnames(info) <- c('Number of Overlapping States', 'Frequency')
info$State <- gsub('\\..*', '', rownames(info))
rownames(info) <- NULL
kable(info, format = 'html', align=rep('c', 4))
Number of Overlapping States Frequency State
0 16206 exon
1 3899 exon
2 40 exon
0 17836 intragenic
1 2309 intragenic
0 18077 intron
1 2000 intron
2 66 intron
3 1 intron
4 1 intron

Region information

Below is an interactive table with the top 500 regions (out of 20145) as ranked by area. Inf and -Inf are shown as 1e100 and -1e100 respectively.

topArea <- head(regions.df, nBestRegions * 5)
topArea <- data.frame('areaRank'=order(topArea$area, decreasing=TRUE), topArea)
## Clean up -Inf, Inf if present
## More details at https://github.com/ramnathv/rCharts/issues/259
replaceInf <- function(df, colsubset=seq_len(ncol(df))) {
    for(i in colsubset) {
        inf.idx <- !is.finite(df[, i])
        if(any(inf.idx)) {
            inf.sign <- sign(df[inf.idx, i])
            df[inf.idx, i] <- inf.sign * 1e100
        }
    }
    return(df)
}
topArea <- replaceInf(topArea, grep('log2FoldChange|value|area',
    colnames(topArea)))

## Make the table
kable(topArea, format = 'html', table.attr='id="regions_table"')
areaRank seqnames start end width strand value area indexStart indexEnd cluster clusterL meanCoverage mean0to186 mean186to294 mean294to322 mean322to400 log2FoldChange186to294vs0to186 log2FoldChange294to322vs0to186 log2FoldChange322to400vs0to186 pvalues significant qvalues significantQval name annotation description region distance subregion insidedistance exonnumber nexons UTR annoStrand geneL codingL fwer significantFWER
1 chr1 26752733 26756208 3476
79.51398 276390.597 4578285 4581760 115 4415 4.8777762 0.0697929 0.1279056 0.2846951 19.0287112 8.739284e-01 2.028266e+00 8.090883e+00 0.0000002 TRUE 0.0024182 TRUE LIN28A NM_024674 NP_078950 XM_006710899 XM_006710900 XP_006710962 XP_006710963 inside exon inside 15464 inside exon 0 4 4 overlaps 3'UTR
18950 15566 0.01 TRUE
2 chr8 41119492 41121402 1911
87.95128 168074.896 3330155 3332065 129 3517 2.6681057 0.1735217 0.0528519 0.0211408 10.4249084 -1.715089e+00 -3.037017e+00 5.908775e+00 0.0000006 TRUE 0.0024182 TRUE SFRP1 NM_003012 NP_003003 inside exon inside 45588 inside exon 0 3 3 3'UTR
47514 43992 0.03 TRUE
3 chr11 119288701 119290230 1530
77.58648 118707.318 12872515 12874044 381 5197 3.1359477 0.2879739 0.2121569 0.1452288 11.8984314 -4.408065e-01 -9.876107e-01 5.368690e+00 0.0000012 TRUE 0.0024182 TRUE THY1 NM_006288 NP_006279 inside exon inside 4016 inside exon 0 4 4 overlaps 3'UTR
5591 1497 0.04 TRUE
4 chr5 146770385 146772376 1992
59.48379 118491.706 12805081 12807072 394 10875 1.9074046 0.3864458 0.2535141 0.1276104 6.8620482 -6.082003e-01 -1.598520e+00 4.150301e+00 0.0000012 TRUE 0.0024182 TRUE DPYSL3 NM_001197294 NM_001387 NP_001184223 NP_001378 inside exon inside 117243 inside exon 0 14 14 3'UTR
119248 115823 0.04 TRUE
5 chr6 121767978 121769318 1341
72.01807 96576.237 11635359 11636699 325 2859 2.8424683 0.4359433 0.5225951 0.2334079 10.1779269 2.615529e-01 -9.012872e-01 4.545159e+00 0.0000015 TRUE 0.0024182 TRUE GJA1 NM_000165 NP_000156 inside exon inside 11233 inside exon 0 2 2 overlaps 3'UTR
14128 1148 0.05 FALSE
6 chr3 181430237 181431387 1151
77.21343 88872.661 16396498 16397648 513 2487 2.5397046 0.1052997 0.0000000 0.2807993 9.7727194 -1.000000e+100 1.415037e+00 6.536186e+00 0.0000019 TRUE 0.0024182 TRUE SOX2 NM_003106 NP_003097 inside exon inside 525 inside exon 0 1 1 overlaps 3'UTR
2511 953 0.05 FALSE
7 chr1 156639292 156640300 1009
86.83235 87613.840 19868677 19869685 536 8487 1.4092170 0.3002973 0.0000000 0.0000000 5.3365709 -1.000000e+100 -1.000000e+100 4.151450e+00 0.0000019 TRUE 0.0024182 TRUE NES NM_006617 NP_006608 inside exon inside 6889 inside exon 0 4 4 inside transcription region
8633 7942 0.05 FALSE
8 chr17 47131156 47132322 1167
73.50336 85778.421 9735800 9736966 231 18864 1.0700943 0.0000000 0.0000000 0.0000000 4.2803770 NaN NaN 1.000000e+100 0.0000019 TRUE 0.0024182 TRUE IGF2BP1 NM_001160423 NM_006546 NP_001153895 NP_006537 XM_005256955 XP_005257012 inside exon inside 56382 inside exon 0 13 13 3'UTR
58733 51698 0.05 FALSE
9 chr3 46623010 46623949 940
91.12368 85656.263 5014344 5015283 116 4837 2.3481915 0.0000000 0.0000000 0.0000000 9.3927660 NaN NaN 1.000000e+100 0.0000019 TRUE 0.0024182 TRUE TDGF1 NM_001174136 NM_003212 NP_001167607 NP_003203 inside exon inside 3934 inside exon 0 6 6 3'UTR
4876 3280 0.05 FALSE
10 chr4 88852568 88853551 984
84.47945 83127.783 6772611 6773594 233 15558 1.0010163 0.0000000 0.0000000 0.0000000 4.0040650 NaN NaN 1.000000e+100 0.0000019 TRUE 0.0024182 TRUE SPP1 NM_000582 NM_001040058 NM_001040060 NM_001251829 NM_001251830 NP_000573 NP_001035147 NP_001035149 NP_001238758 NP_001238759 upstream upstream 43251 NA NA NA 7 NA
7761 6000 0.05 FALSE
11 chr13 51749186 51750194 1009
82.11605 82855.098 3598908 3599916 92 10662 3.4682854 0.0000000 0.0000000 0.0000000 13.8731417 NaN NaN 1.000000e+100 0.0000020 TRUE 0.0024182 TRUE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.05 FALSE
12 chr14 74825669 74826706 1038
76.47094 79376.834 6617553 6618590 201 3221 1.0861753 0.0000000 0.0000000 0.0000000 4.3447013 NaN NaN 1.000000e+100 0.0000020 TRUE 0.0024182 TRUE VRTN NM_018228 NP_060698 inside exon inside 10503 inside exon 0 2 2 3'UTR
11545 2108 0.05 FALSE
13 chr6 121769324 121770282 959
79.73529 76466.143 11636704 11637662 325 2859 4.2765902 0.4027112 0.2573514 0.7966632 15.6496350 -6.460058e-01 9.842245e-01 5.280240e+00 0.0000024 TRUE 0.0024182 TRUE GJA1 NM_000165 NP_000156 inside exon inside 12579 inside exon 0 2 2 3'UTR
14128 1148 0.06 FALSE
14 chr2 241653373 241654359 987
77.21894 76215.091 23640292 23641278 634 13166 1.2658561 0.0435664 0.0000000 0.0000000 5.0198582 -1.000000e+100 -1.000000e+100 6.848288e+00 0.0000024 TRUE 0.0024182 TRUE KIF1A NM_001244008 NM_004321 NP_001230937 NP_004312 XM_005247022 XM_005247023 XM_005247024 XM_005247026 XM_005247027 XM_005247028 XM_006712601 XM_006712602 XM_006712603 XM_006712604 XM_006712605 XP_005247079 XP_005247080 XP_005247081 XP_005247083 XP_005247084 XP_005247085 XP_006712664 XP_006712665 XP_006712666 XP_006712667 XP_006712668 inside exon inside 105366 inside exon 0 49 49 3'UTR
106544 80388 0.06 FALSE
15 chrX 91355122 91355987 866
85.19922 73782.524 5968604 5969469 243 5561 3.1404157 0.0808314 0.0004619 0.0198614 12.4605081 -7.451211e+00 -2.024946e+00 7.268231e+00 0.0000024 TRUE 0.0024182 TRUE PCDH11X NM_001168360 NM_001168361 NM_001168362 NM_001168363 NM_014522 NM_032967 NM_032968 NM_032969 NP_001161832 NP_001161833 NP_001161834 NP_001161835 NP_055337 NP_116749 NP_116750 NP_116751 inside intron inside 264662 inside intron 100387 3 7 inside transcription region
787768 632811 0.06 FALSE
16 chr8 41121658 41122662 1005
72.05638 72416.664 3332321 3333325 129 3517 1.5849751 0.2612935 0.1681592 0.0000000 5.9104478 -6.358437e-01 -1.000000e+100 4.499524e+00 0.0000025 TRUE 0.0024182 TRUE SFRP1 NM_003012 NP_003003 inside exon inside 44328 inside exon 0 3 3 3'UTR
47514 43992 0.06 FALSE
17 chr4 154701763 154702907 1145
62.77889 71881.833 11398405 11399549 423 1145 5.5295197 0.3785153 0.5287336 0.5998253 20.6110044 4.821895e-01 6.641909e-01 5.766919e+00 0.0000025 TRUE 0.0024182 TRUE SFRP2 NM_003013 NP_003004 inside exon inside 7321 inside exon 0 3 3 overlaps 3'UTR
8486 7384 0.06 FALSE
18 chr7 121701134 121702031 898
76.71994 68894.502 12251034 12251931 334 3203 1.4444321 0.0000000 0.0000000 0.0000000 5.7777283 NaN NaN 1.000000e+100 0.0000025 TRUE 0.0024182 TRUE PTPRZ1 NM_001206838 NM_001206839 NM_002851 NP_001193767 NP_001193768 NP_002842 XM_005250519 XM_006716076 XP_005250576 XP_006716139 inside exon inside 187975 inside exon 0 30 30 overlaps 3'UTR
188931 187720 0.06 FALSE
19 chr3 54666156 54666863 708
91.78333 64982.599 7090615 7091322 171 7351 2.8867232 0.0000000 0.0000000 0.0000000 11.5468927 NaN NaN 1.000000e+100 0.0000027 TRUE 0.0024182 TRUE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.06 FALSE
20 chr17 47129292 47130155 864
73.29115 63323.553 9734055 9734918 231 18864 0.9523727 0.0467593 0.0000000 0.0000000 3.7627315 -1.000000e+100 -1.000000e+100 6.330385e+00 0.0000028 TRUE 0.0024182 TRUE IGF2BP1 NM_001160423 NM_006546 NP_001153895 NP_006537 XM_005256955 XP_005257012 inside exon inside 54518 inside exon 0 13 13 3'UTR
58733 51698 0.06 FALSE
21 chr4 180088184 180089122 939
66.96376 62878.974 12307600 12308538 468 3689 3.8029286 0.3011715 0.3669862 0.4517572 14.0917998 2.851406e-01 5.849625e-01 5.548127e+00 0.0000030 TRUE 0.0024182 TRUE LINC01098 NM_001085490 NR_028342 NA NA 0 NA NA NA 6 NA
0 0 0.06 FALSE
22 chr13 100638293 100639019 727
84.29721 61284.073 5450930 5451656 193 5501 1.8143741 0.0000000 0.0000000 0.0555708 7.2019257 NaN 1.000000e+100 1.000000e+100 0.0000030 TRUE 0.0024182 TRUE ZIC2 NM_007129 NP_009060 inside exon inside 4267 inside exon 0 3 3 3'UTR
4993 3617 0.06 FALSE
23 chr2 241655024 241655866 843
72.26168 60916.595 23641882 23642724 634 13166 1.2413998 0.0000000 0.0000000 0.0000000 4.9655991 NaN NaN 1.000000e+100 0.0000030 TRUE 0.0024182 TRUE KIF1A NM_001244008 NM_004321 NP_001230937 NP_004312 XM_005247022 XM_005247023 XM_005247024 XM_005247026 XM_005247027 XM_005247028 XM_006712601 XM_006712602 XM_006712603 XM_006712604 XM_006712605 XP_005247079 XP_005247080 XP_005247081 XP_005247083 XP_005247084 XP_005247085 XP_006712664 XP_006712665 XP_006712666 XP_006712667 XP_006712668 inside exon inside 103859 inside exon 0 49 49 3'UTR
106544 80388 0.06 FALSE
24 chrX 91359597 91360452 856
70.66158 60486.309 5972735 5973590 243 5561 1.2372664 0.0000000 0.0007009 0.0000000 4.9483645 1.000000e+100 NaN 1.000000e+100 0.0000030 TRUE 0.0024182 TRUE PCDH11X NM_001168360 NM_001168361 NM_001168362 NM_001168363 NM_014522 NM_032967 NM_032968 NM_032969 NP_001161832 NP_001161833 NP_001161834 NP_001161835 NP_055337 NP_116749 NP_116750 NP_116751 inside intron inside 269137 inside intron 95922 3 7 inside transcription region
787768 632811 0.06 FALSE
25 chr16 3065360 3066043 684
86.94394 59469.653 1016030 1016713 34 3462 4.2547515 0.1181287 0.1640351 0.0295322 16.7073099 4.736455e-01 -2.000000e+00 7.143977e+00 0.0000030 TRUE 0.0024182 TRUE CLDN6 NM_021195 NP_067018 inside exon inside 2145 inside exon 0 2 2 overlaps 5' UTR
3475 662 0.06 FALSE
26 chr17 47127878 47128536 659
81.24108 53537.874 9733135 9733793 231 18864 0.7050076 0.0000000 0.0000000 0.0000000 2.8200303 NaN NaN 1.000000e+100 0.0000048 TRUE 0.0033120 TRUE IGF2BP1 NM_001160423 NM_006546 NP_001153895 NP_006537 XM_005256955 XP_005257012 inside exon inside 53104 inside exon 0 13 13 3'UTR
58733 51698 0.11 FALSE
27 chr16 3064714 3065348 635
82.75103 52546.906 1015384 1016018 34 3462 3.5320472 0.0000000 0.0000000 0.0000000 14.1281890 NaN NaN 1.000000e+100 0.0000051 TRUE 0.0033120 TRUE CLDN6 NM_021195 NP_067018 inside exon inside 2840 inside exon 0 2 2 3'UTR
3475 662 0.11 FALSE
28 chr4 79637144 79637240 97
538.39311 52224.132 5869245 5869341 208 1740 0.4500000 0.0000000 0.0000000 0.0000000 1.8000000 NaN NaN 1.000000e+100 0.0000051 TRUE 0.0033120 TRUE LINC01094 NR_038303 NR_038304 NR_038305 NR_038306 NR_038307 NR_038308 NA NA 0 NA NA NA 5 NA
0 0 0.11 FALSE
29 chr1 223198626 223199262 637
79.44571 50606.916 26367323 26367959 754 8216 1.4865777 0.0000000 0.0681319 0.0028257 5.8753532 1.000000e+100 1.000000e+100 1.000000e+100 0.0000056 TRUE 0.0033120 TRUE DISP1 NM_032890 NP_116279 XM_005273335 XM_005273336 XM_006711592 XM_006711593 XM_006711594 XM_006711595 XP_005273392 XP_005273393 XP_006711655 XP_006711656 XP_006711657 XP_006711658 downstream downstream 210195 NA NA NA 10 NA
190906 63148 0.12 FALSE
30 chr1 223199880 223200539 660
76.59289 50551.310 26368088 26368747 754 8216 1.7748485 0.3657576 0.5766667 0.1530303 6.0039394 6.568499e-01 -1.257070e+00 4.036950e+00 0.0000056 TRUE 0.0033120 TRUE DISP1 NM_032890 NP_116279 XM_005273335 XM_005273336 XM_006711592 XM_006711593 XM_006711594 XM_006711595 XP_005273392 XP_005273393 XP_006711655 XP_006711656 XP_006711657 XP_006711658 downstream downstream 211449 NA NA NA 10 NA
190906 63148 0.12 FALSE
31 chr6 114745695 114746541 847
59.39083 50304.036 11097112 11097958 302 5708 2.1714286 0.2817001 0.5584416 0.3397875 7.5057851 9.872461e-01 2.704725e-01 4.735771e+00 0.0000056 TRUE 0.0033120 TRUE HS3ST5 NM_153612 NP_705840 XM_006715379 XP_006715442 upstream upstream 82155 NA NA NA 5 NA
286790 5588 0.12 FALSE
32 chr6 114744941 114745647 707
70.27914 49687.350 11096383 11097089 302 5708 2.1809760 0.0571429 0.1142857 0.0000000 8.5524752 1.000000e+00 -1.000000e+100 7.225625e+00 0.0000058 TRUE 0.0033120 TRUE HS3ST5 NM_153612 NP_705840 XM_006715379 XP_006715442 upstream upstream 81401 NA NA NA 5 NA
286790 5588 0.13 FALSE
33 chrX 91357652 91358393 742
66.78027 49550.959 5970991 5971732 243 5561 0.8698787 0.0000000 0.0000000 0.0215633 3.4579515 NaN 1.000000e+100 1.000000e+100 0.0000058 TRUE 0.0033120 TRUE PCDH11X NM_001168360 NM_001168361 NM_001168362 NM_001168363 NM_014522 NM_032967 NM_032968 NM_032969 NP_001161832 NP_001161833 NP_001161834 NP_001161835 NP_055337 NP_116749 NP_116750 NP_116751 inside intron inside 267192 inside intron 97981 3 7 inside transcription region
787768 632811 0.13 FALSE
34 chr6 121770288 121770836 549
89.76355 49280.187 11637668 11638216 325 2859 7.2091075 0.4346084 0.1428051 0.8382514 27.4207650 -1.605668e+00 9.476669e-01 5.979409e+00 0.0000059 TRUE 0.0033120 TRUE GJA1 NM_000165 NP_000156 inside exon inside 13543 inside exon 0 2 2 3'UTR
14128 1148 0.13 FALSE
35 chr21 44473331 44474093 763
64.42285 49154.637 2429142 2429904 56 13860 4.4161861 0.5698558 0.7216252 0.4773263 15.8959371 3.406527e-01 -2.556210e-01 4.801917e+00 0.0000061 TRUE 0.0033120 TRUE CBS NM_000071 NM_001178008 NM_001178009 NP_000062 NP_001171479 NP_001171480 XM_006724057 XP_006724120 overlaps two exons inside 22379 overlaps two exons 0 18 18 overlaps 3'UTR
23171 18313 0.13 FALSE
36 chr3 32937639 32938161 523
93.94208 49131.707 3398644 3399166 82 7451 1.3167304 0.0772467 0.2260038 0.0772467 4.8864245 1.548803e+00 0.000000e+00 5.983163e+00 0.0000061 TRUE 0.0033120 TRUE TRIM71 NM_001039111 NP_001034200 downstream downstream 78129 NA NA NA 4 NA
74261 73730 0.13 FALSE
37 chr4 154709486 154710211 726
67.27886 48844.451 11400187 11400912 424 3196 3.8529614 0.3614325 0.2953168 0.6955923 14.0595041 -2.914628e-01 9.445157e-01 5.281676e+00 0.0000061 TRUE 0.0033120 TRUE SFRP2 NM_003013 NP_003004 inside exon inside 17 inside exon 0 1 3 overlaps 5' UTR
8486 7384 0.13 FALSE
38 chr17 47132578 47133188 611
75.05311 45857.449 9737063 9737673 231 18864 1.3646481 0.0000000 0.0000000 0.0000000 5.4585925 NaN NaN 1.000000e+100 0.0000074 TRUE 0.0038991 TRUE IGF2BP1 NM_001160423 NM_006546 NP_001153895 NP_006537 XM_005256955 XP_005257012 inside exon inside 57804 inside exon 0 13 13 3'UTR
58733 51698 0.14 FALSE
39 chr12 66358871 66359574 704
64.08708 45117.303 8151553 8152256 215 2964 1.3661222 0.1147727 0.2295455 0.1127841 5.0073864 1.000000e+00 -2.521630e-02 5.447206e+00 0.0000077 TRUE 0.0038991 TRUE HMGA2 NM_001015886 NM_003483 NM_003484 NP_003474 NP_003475 XM_005269164 XM_006719620 XP_005269221 XP_006719683 XR_245958 inside exon inside 140631 inside exon 0 5 5 3'UTR
141831 138021 0.14 FALSE
40 chr13 43439807 43440537 731
60.07805 43917.055 2379953 2380683 57 13438 0.7550616 0.0484268 0.0276334 0.0259918 2.9181943 -8.093941e-01 -8.977499e-01 5.913126e+00 0.0000080 TRUE 0.0038991 TRUE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 125870 NA NA NA 13 NA
105883 103915 0.14 FALSE
41 chr13 56152175 56152866 692
62.81466 43467.747 3924107 3924798 121 13379 0.9393064 0.0000000 0.0291908 0.0291908 3.6988439 1.000000e+100 1.000000e+100 1.000000e+100 0.0000082 TRUE 0.0038991 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.14 FALSE
42 chr12 66357288 66358026 739
58.19693 43007.531 8150015 8150753 215 2964 1.1100812 0.2159675 0.1093369 0.0546685 4.0603518 -9.820335e-01 -1.982034e+00 4.232718e+00 0.0000082 TRUE 0.0038991 TRUE HMGA2 NM_001015886 NM_003483 NM_003484 NP_003474 NP_003475 XM_005269164 XM_006719620 XP_005269221 XP_006719683 XR_245958 inside exon inside 139048 inside exon 0 5 5 3'UTR
141831 138021 0.14 FALSE
43 chr2 77326330 77326911 582
72.88709 42420.286 8971477 8972058 213 11162 1.0189003 0.0000000 0.0000000 0.0000000 4.0756014 NaN NaN 1.000000e+100 0.0000085 TRUE 0.0038991 TRUE LRRTM4 NM_001134745 NM_001282924 NM_001282928 NM_024993 NP_001128217 NP_001269853 NP_001269857 NP_079269 inside intron inside 422591 inside intron 350288 4 4 inside transcription region
774652 772976 0.14 FALSE
44 chr17 47130651 47131149 499
84.31263 42072.000 9735301 9735799 231 18864 1.3081162 0.0404810 0.0000000 0.0000000 5.1919840 -1.000000e+100 -1.000000e+100 7.002898e+00 0.0000085 TRUE 0.0038991 TRUE IGF2BP1 NM_001160423 NM_006546 NP_001153895 NP_006537 XM_005256955 XP_005257012 inside exon inside 55877 inside exon 0 13 13 3'UTR
58733 51698 0.14 FALSE
45 chr5 141690136 141690841 706
56.93979 40199.495 12323735 12324440 384 14439 0.9403683 0.0858357 0.0000000 0.0000000 3.6756374 -1.000000e+100 -1.000000e+100 5.420273e+00 0.0000095 TRUE 0.0042482 TRUE SPRY4 NM_001127496 NM_030964 NP_001120968 NP_112226 XM_005268518 XM_005268519 XM_006714798 XP_005268575 XP_005268576 XP_006714861 inside exon inside 13779 inside exon 0 3 3 3'UTR
14628 5556 0.15 FALSE
46 chr3 54672858 54673506 649
61.42271 39863.336 7096453 7097101 171 7351 2.5134823 0.0126348 0.1531587 0.1839753 9.7041602 3.599550e+00 3.864035e+00 9.585054e+00 0.0000098 TRUE 0.0042979 TRUE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.15 FALSE
47 chr8 41166135 41166594 460
83.40009 38364.041 3333665 3334124 132 645 0.8604348 0.1756522 0.0000000 0.0000000 3.2660870 -1.000000e+100 -1.000000e+100 4.216770e+00 0.0000113 TRUE 0.0047505 TRUE SFRP1 NM_003012 NP_003003 inside exon inside 396 inside exon 0 1 3 inside transcription region
47514 43992 0.16 FALSE
48 chr14 74824318 74824928 611
62.38688 38118.382 6616508 6617118 201 3221 0.8617840 0.0000000 0.0000000 0.0000000 3.4471358 NaN NaN 1.000000e+100 0.0000114 TRUE 0.0047505 TRUE VRTN NM_018228 NP_060698 inside exon inside 9152 inside exon 0 2 2 inside transcription region
11545 2108 0.16 FALSE
49 chr3 109048421 109049064 644
58.04171 37378.859 10144324 10144967 311 11345 1.1377329 0.1524845 0.1704969 0.1121118 4.1158385 1.610831e-01 -4.437242e-01 4.754452e+00 0.0000118 TRUE 0.0047505 TRUE DPPA4 NM_018189 NP_060659 inside intron inside 7355 inside intron 493 5 6 inside transcription region
11431 8594 0.16 FALSE
50 chr2 67566463 67567059 597
62.44863 37281.832 7345013 7345609 170 8050 0.8389447 0.0000000 0.0000000 0.0000000 3.3557789 NaN NaN 1.000000e+100 0.0000121 TRUE 0.0047505 TRUE ETAA1 NM_019002 NP_061875 XM_005264374 XM_005264375 XM_005264376 XM_005264377 XM_005264378 XP_005264431 XP_005264432 XP_005264433 XP_005264434 XP_005264435 upstream upstream 57383 NA NA NA 6 NA
13091 12589 0.16 FALSE
51 chr13 56148912 56149439 528
70.13353 37030.504 3921469 3921996 121 13379 1.1949811 0.0000000 0.0000000 0.0000000 4.7799242 NaN NaN 1.000000e+100 0.0000122 TRUE 0.0047505 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.16 FALSE
52 chrX 91356934 91357441 508
72.62517 36893.584 5970397 5970904 243 5561 0.9522638 0.0000000 0.0000000 0.0000000 3.8090551 NaN NaN 1.000000e+100 0.0000124 TRUE 0.0047505 TRUE PCDH11X NM_001168360 NM_001168361 NM_001168362 NM_001168363 NM_014522 NM_032967 NM_032968 NM_032969 NP_001161832 NP_001161833 NP_001161834 NP_001161835 NP_055337 NP_116749 NP_116750 NP_116751 inside intron inside 266474 inside intron 98933 3 7 inside transcription region
787768 632811 0.16 FALSE
53 chr13 51746403 51746853 451
81.62126 36811.190 3596182 3596632 92 10662 1.7410200 0.0110865 0.0895787 0.0000000 6.8634146 3.014355e+00 -1.000000e+100 9.273982e+00 0.0000127 TRUE 0.0047505 TRUE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.16 FALSE
54 chr6 114743647 114744115 469
77.90835 36539.014 11095102 11095570 302 5708 6.9364606 0.2443497 1.1053305 0.3876333 26.0085288 2.177459e+00 6.657452e-01 6.733894e+00 0.0000127 TRUE 0.0047505 TRUE HS3ST5 NM_153612 NP_705840 XM_006715379 XP_006715442 upstream upstream 80107 NA NA NA 5 NA
286790 5588 0.16 FALSE
55 chrX 91358915 91359495 581
61.80140 35906.611 5972053 5972633 243 5561 1.0418244 0.0000000 0.0117040 0.0000000 4.1555938 1.000000e+100 NaN 1.000000e+100 0.0000135 TRUE 0.0049612 TRUE PCDH11X NM_001168360 NM_001168361 NM_001168362 NM_001168363 NM_014522 NM_032967 NM_032968 NM_032969 NP_001161832 NP_001161833 NP_001161834 NP_001161835 NP_055337 NP_116749 NP_116750 NP_116751 inside intron inside 268455 inside intron 96879 3 7 inside transcription region
787768 632811 0.17 FALSE
56 chr19 45411790 45412262 473
74.22039 35106.247 9396803 9397275 286 3581 3.5921776 0.4579281 0.3302326 0.4046512 13.1758985 -4.716388e-01 -1.784424e-01 4.846636e+00 0.0000148 TRUE 0.0053394 TRUE APOE NM_000041 NP_000032 XM_005258867 XP_005258924 inside exon inside 2751 inside exon 0 4 4 inside transcription region
3611 2625 0.19 FALSE
57 chr4 41270004 41270441 438
78.55461 34406.920 3753829 3754266 117 11482 9.1081050 1.9310502 1.1945205 0.2452055 33.0616438 -6.929540e-01 -2.977323e+00 4.097701e+00 0.0000153 TRUE 0.0054177 TRUE UCHL1 NM_004181 NP_004172 inside exon inside 11106 inside exon 0 8 8 overlaps 3'UTR
11548 7357 0.19 FALSE
58 chr3 181431436 181431922 487
68.44358 33332.023 16397679 16398165 513 2487 1.7767967 0.0000000 0.0000000 0.2106776 6.8965092 NaN 1.000000e+100 1.000000e+100 0.0000165 TRUE 0.0054552 TRUE SOX2 NM_003106 NP_003097 inside exon inside 1724 inside exon 0 1 1 3'UTR
2511 953 0.20 FALSE
59 chr15 65619625 65620146 522
63.55412 33175.251 5963610 5964131 184 8664 0.6612069 0.0000000 0.0773946 0.0000000 2.5674330 1.000000e+100 NaN 1.000000e+100 0.0000168 TRUE 0.0054552 TRUE IGDCC3 NM_004884 NP_004875 inside exon inside 50232 inside exon 0 14 14 3'UTR
50913 48879 0.21 FALSE
60 chr2 77325816 77326288 473
69.39551 32824.077 8970981 8971453 213 11162 0.8267442 0.0000000 0.0000000 0.0000000 3.3069767 NaN NaN 1.000000e+100 0.0000168 TRUE 0.0054552 TRUE LRRTM4 NM_001134745 NM_001282924 NM_001282928 NM_024993 NP_001128217 NP_001269853 NP_001269857 NP_079269 inside intron inside 423214 inside intron 349774 4 4 inside transcription region
774652 772976 0.21 FALSE
61 chr21 24734077 24734561 485
67.64219 32806.461 325119 325603 19 2439 0.6385567 0.0000000 0.0000000 0.0000000 2.5542268 NaN NaN 1.000000e+100 0.0000168 TRUE 0.0054552 TRUE D21S2088E NR_040254 NA NA 0 NA NA NA 5 NA
0 0 0.21 FALSE
62 chr13 100634699 100635393 695
47.18415 32792.984 5449544 5450238 193 5501 1.2333094 0.0581295 0.0000000 0.0000000 4.8751079 -1.000000e+100 -1.000000e+100 6.390020e+00 0.0000168 TRUE 0.0054552 TRUE ZIC2 NM_007129 NP_009060 inside exon inside 673 inside exon 0 1 3 inside transcription region
4993 3617 0.21 FALSE
63 chr13 51744861 51745332 472
68.98421 32560.548 3594902 3595373 92 10662 0.5984110 0.0296610 0.0000000 0.0000000 2.3639831 -1.000000e+100 -1.000000e+100 6.316508e+00 0.0000176 TRUE 0.0055400 TRUE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.21 FALSE
64 chr6 132240713 132241139 427
75.96594 32437.456 12339917 12340343 349 3398 0.5853630 0.0000000 0.0000000 0.0000000 2.3414520 NaN NaN 1.000000e+100 0.0000176 TRUE 0.0055400 TRUE ENPP1 NM_006208 NP_006199 XM_005267017 XP_005267074 downstream downstream 111557 NA NA NA 25 NA
87139 82475 0.21 FALSE
65 chr4 180089245 180089661 417
75.93957 31666.803 12308539 12308955 468 3689 1.2370504 0.0000000 0.0000000 0.0000000 4.9482014 NaN NaN 1.000000e+100 0.0000195 TRUE 0.0058388 TRUE LINC01098 NM_001085490 NR_028342 NA NA 0 NA NA NA 6 NA
0 0 0.22 FALSE
66 chrX 91356437 91356913 477
66.17958 31567.659 5969919 5970395 243 5561 1.4183438 0.0000000 0.0000000 0.0000000 5.6733753 NaN NaN 1.000000e+100 0.0000197 TRUE 0.0058388 TRUE PCDH11X NM_001168360 NM_001168361 NM_001168362 NM_001168363 NM_014522 NM_032967 NM_032968 NM_032969 NP_001161832 NP_001161833 NP_001161834 NP_001161835 NP_055337 NP_116749 NP_116750 NP_116751 inside intron inside 265977 inside intron 99461 3 7 inside transcription region
787768 632811 0.22 FALSE
67 chr6 114744120 114744644 525
59.73328 31359.973 11095575 11096099 302 5708 2.7027619 0.1154286 0.1859048 0.1539048 10.3558095 6.875634e-01 4.150375e-01 6.487296e+00 0.0000197 TRUE 0.0058388 TRUE HS3ST5 NM_153612 NP_705840 XM_006715379 XP_006715442 upstream upstream 80580 NA NA NA 5 NA
286790 5588 0.22 FALSE
68 chr13 51747951 51748271 321
97.26020 31220.525 3597688 3598008 92 10662 2.9612150 0.0342679 0.0542056 0.0000000 11.7563863 6.615838e-01 -1.000000e+100 8.422371e+00 0.0000197 TRUE 0.0058388 TRUE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.22 FALSE
69 chr6 31137993 31138419 427
72.61842 31008.067 3620462 3620888 81 1547 9.3961358 0.0730679 0.7199063 0.3353630 36.4562061 3.300499e+00 2.198414e+00 8.962711e+00 0.0000204 TRUE 0.0059437 TRUE POU5F1 NM_001173531 NM_001285986 NM_001285987 NM_002701 NM_203289 NP_001167002 NP_001272915 NP_001272916 NP_002692 NP_976034 inside exon inside 32 inside exon 0 1 5 overlaps 5' UTR
6337 6019 0.22 FALSE
70 chr6 3224547 3225079 533
58.00959 30919.112 464184 464716 12 3330 7.9213884 2.6101313 1.8840525 1.2243902 25.9669794 -4.702832e-01 -1.092059e+00 3.314484e+00 0.0000208 TRUE 0.0059603 TRUE TUBB2B NM_178012 NP_821080 inside exon inside 2889 inside exon 0 4 4 overlaps 3'UTR
3473 2792 0.22 FALSE
71 chr1 156642094 156642564 471
65.51656 30858.301 19871080 19871550 536 8487 0.7092357 0.0428875 0.0000000 0.0000000 2.7940552 -1.000000e+100 -1.000000e+100 6.025660e+00 0.0000210 TRUE 0.0059603 TRUE NES NM_006617 NP_006608 inside exon inside 4625 inside exon 0 4 4 inside transcription region
8633 7942 0.22 FALSE
72 chr10 53793590 53794057 468
64.76130 30308.289 5589015 5589482 138 5761 2.4260684 0.0863248 0.0863248 0.0000000 9.5316239 0.000000e+00 -1.000000e+100 6.786803e+00 0.0000221 TRUE 0.0061104 TRUE PRKG1 NM_001098512 NM_006258 NP_001091982 NP_006249 XM_005269970 XM_005269971 XM_005269972 XP_005270027 XP_005270028 XP_005270029 inside intron inside 959356 inside intron 20187 6 18 inside transcription region
1223876 1219309 0.23 FALSE
73 chr3 46622622 46622994 373
81.24420 30304.086 5013971 5014343 116 4837 2.2241287 0.0000000 0.0000000 0.0000000 8.8965147 NaN NaN 1.000000e+100 0.0000221 TRUE 0.0061104 TRUE TDGF1 NM_001174136 NM_003212 NP_001167607 NP_003203 inside exon inside 3546 inside exon 0 6 6 overlaps 3'UTR
4876 3280 0.23 FALSE
74 chr4 93361855 93361950 96
313.08401 30056.065 7116442 7116537 250 6141 0.6572917 0.0000000 0.0000000 0.0000000 2.6291667 NaN NaN 1.000000e+100 0.0000238 TRUE 0.0063471 TRUE GRID2 NM_001286838 NM_001510 NP_001273767 NP_001501 XM_006714195 XP_006714258 inside intron inside 136305 inside intron -135960 1 15 inside transcription region
1468099 1467841 0.23 FALSE
75 chr13 51744366 51744682 317
94.75880 30038.539 3594552 3594868 92 10662 1.0873817 0.0000000 0.0000000 0.0000000 4.3495268 NaN NaN 1.000000e+100 0.0000239 TRUE 0.0063471 TRUE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.23 FALSE
76 chr1 156638790 156639287 498
59.98427 29872.168 19868175 19868672 536 8487 1.4372490 0.6622490 0.2433735 0.0000000 4.8433735 -1.444202e+00 -1.000000e+100 2.870567e+00 0.0000246 TRUE 0.0063471 TRUE NES NM_006617 NP_006608 inside exon inside 7902 inside exon 0 4 4 overlaps 3'UTR
8633 7942 0.23 FALSE
77 chr16 3140235 3140562 328
90.96302 29835.870 1054851 1055178 35 10352 0.8522866 0.0000000 0.0829268 0.0615854 3.2646341 1.000000e+100 1.000000e+100 1.000000e+100 0.0000246 TRUE 0.0063471 TRUE ZSCAN10 NM_001282415 NM_001282416 NM_032805 NP_001269344 NP_001269345 NP_116194 inside exon inside 8731 inside exon 0 5 5 overlaps 5' UTR
10398 1160 0.23 FALSE
78 chr13 53277405 53277933 529
56.30227 29783.903 3907679 3908207 103 529 1.4676749 0.0355388 0.0007561 0.0211720 5.8132325 -5.554589e+00 -7.472339e-01 7.353804e+00 0.0000246 TRUE 0.0063471 TRUE LECT1 NM_001011705 NM_007015 NP_001011705 NP_008946 XM_006719760 XM_006719761 XP_006719823 XP_006719824 inside exon inside 36014 inside exon 0 6 6 overlaps 3'UTR
36547 36187 0.23 FALSE
79 chr20 38901726 38902118 393
75.09322 29511.636 4403076 4403468 116 5560 1.2376590 0.0000000 0.0513995 0.1027990 4.7964377 1.000000e+100 1.000000e+100 1.000000e+100 0.0000252 TRUE 0.0064323 TRUE MAFB NM_005461 NP_005452 downstream downstream 415758 NA NA NA 1 NA
3359 971 0.23 FALSE
80 chr2 1636024 1636547 524
55.88506 29283.774 68785 69308 2 3615 1.8604962 1.4286260 0.0770992 0.1541985 5.7820611 -4.211768e+00 -3.211768e+00 2.016956e+00 0.0000260 TRUE 0.0065561 TRUE PXDN NM_012293 NP_036425 XM_005264707 XM_006711896 XP_005264764 XP_006711959 inside exon inside 111744 inside exon 0 23 23 3'UTR
112632 110251 0.24 FALSE
81 chr3 32938593 32939100 508
57.19795 29056.558 3399513 3400020 82 7451 2.8214567 0.3248031 0.8153543 0.8303150 9.3153543 1.327862e+00 1.354093e+00 4.841973e+00 0.0000280 TRUE 0.0069593 TRUE TRIM71 NM_001039111 NP_001034200 downstream downstream 79083 NA NA NA 4 NA
74261 73730 0.25 FALSE
82 chr6 114746581 114747109 529
54.60260 28884.773 11097998 11098526 302 5708 1.2026465 0.0000000 0.0015123 0.0056711 4.8034026 1.000000e+100 1.000000e+100 1.000000e+100 0.0000288 TRUE 0.0070278 TRUE HS3ST5 NM_153612 NP_705840 XM_006715379 XP_006715442 upstream upstream 83041 NA NA NA 5 NA
286790 5588 0.26 FALSE
83 chr4 88855096 88855451 356
81.03391 28848.073 6773873 6774228 233 15558 0.7375000 0.0000000 0.0000000 0.0000000 2.9500000 NaN NaN 1.000000e+100 0.0000290 TRUE 0.0070278 TRUE SPP1 NM_000582 NM_001040058 NM_001040060 NM_001251829 NM_001251830 NP_000573 NP_001035147 NP_001035149 NP_001238758 NP_001238759 upstream upstream 41351 NA NA NA 7 NA
7761 6000 0.26 FALSE
84 chr2 67564680 67565017 338
84.98693 28725.581 7344267 7344604 170 8050 0.7118343 0.0000000 0.0000000 0.0000000 2.8473373 NaN NaN 1.000000e+100 0.0000296 TRUE 0.0070866 TRUE ETAA1 NM_019002 NP_061875 XM_005264374 XM_005264375 XM_005264376 XM_005264377 XM_005264378 XP_005264431 XP_005264432 XP_005264433 XP_005264434 XP_005264435 upstream upstream 59425 NA NA NA 6 NA
13091 12589 0.26 FALSE
85 chr15 29992934 29993100 167
171.40441 28624.536 678020 678186 27 5499 0.8221557 0.0023952 0.0000000 0.0000000 3.2862275 -1.000000e+100 -1.000000e+100 1.042206e+01 0.0000299 TRUE 0.0070866 TRUE TJP1 NM_003257 NM_175610 NP_003248 NP_783297 XM_005254616 XM_005254617 XM_005254618 XM_005254619 XM_005254620 XM_005254621 XM_006720660 XM_006720661 XM_006725553 XM_006725554 XM_006725555 XM_006725556 XM_006725557 XM_006725558 XM_006725559 XM_006725560 XP_005254673 XP_005254674 XP_005254675 XP_005254676 XP_005254677 XP_005254678 XP_006720723 XP_006720724 XP_006725616 XP_006725617 XP_006725618 XP_006725619 XP_006725620 XP_006725621 XP_006725622 XP_006725623 inside exon inside 121606 inside exon 0 27 27 3'UTR
122349 120432 0.26 FALSE
86 chr17 41605388 41605870 483
59.07014 28530.878 7969729 7970211 193 6721 1.3430642 0.3345756 0.2927536 0.0418219 4.7031056 -1.926451e-01 -3.000000e+00 3.813210e+00 0.0000303 TRUE 0.0070866 TRUE ETV4 NM_001079675 NM_001261437 NM_001261438 NM_001261439 NM_001986 NP_001073143 NP_001248366 NP_001248367 NP_001248368 NP_001977 inside exon inside 17930 inside exon 0 12 12 3'UTR
18589 16791 0.26 FALSE
87 chr4 180089763 180090165 403
68.29027 27520.979 12309057 12309459 468 3689 0.8524814 0.0000000 0.0000000 0.0000000 3.4099256 NaN NaN 1.000000e+100 0.0000341 TRUE 0.0079067 TRUE LINC01098 NM_001085490 NR_028342 NA NA 0 NA NA NA 6 NA
0 0 0.29 FALSE
88 chr3 181429729 181430064 336
80.48491 27042.929 16396162 16396497 513 2487 1.2839286 0.0000000 0.0726190 0.0000000 5.0630952 1.000000e+100 NaN 1.000000e+100 0.0000359 TRUE 0.0080788 TRUE SOX2 NM_003106 NP_003097 inside exon inside 17 inside exon 0 1 1 5' UTR
2511 953 0.30 FALSE
89 chr3 54667420 54667767 348
77.62833 27014.657 7091866 7092213 171 7351 2.3274425 0.0000000 0.0000000 0.0000000 9.3097701 NaN NaN 1.000000e+100 0.0000359 TRUE 0.0080788 TRUE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.30 FALSE
90 chr4 93174072 93174396 325
82.82230 26917.247 7112874 7113198 248 10998 0.8833846 0.0000000 0.0000000 0.0000000 3.5335385 NaN NaN 1.000000e+100 0.0000361 TRUE 0.0080788 TRUE GRID2 NM_001286838 NM_001510 NP_001273767 NP_001501 XM_006714195 XP_006714258 upstream upstream 51154 NA NA NA 6 NA
912868 912269 0.30 FALSE
91 chr13 43442075 43442357 283
93.63735 26499.371 2381629 2381911 57 13438 0.9687279 0.0275618 0.0374558 0.0049470 3.8049470 4.425182e-01 -2.478047e+00 7.109061e+00 0.0000401 TRUE 0.0088267 TRUE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 124050 NA NA NA 13 NA
105883 103915 0.32 FALSE
92 chr17 47126876 47127312 437
60.28434 26344.256 9732400 9732836 231 18864 1.0913043 0.0000000 0.0000000 0.0000000 4.3652174 NaN NaN 1.000000e+100 0.0000403 TRUE 0.0088267 TRUE IGF2BP1 NM_001160423 NM_006546 NP_001153895 NP_006537 XM_005256955 XP_005257012 inside exon inside 52102 inside exon 0 13 13 3'UTR
58733 51698 0.32 FALSE
93 chr14 74823666 74824084 419
62.27434 26092.950 6616049 6616467 201 3221 1.0640811 0.0763723 0.0964200 0.0000000 4.0835322 3.362834e-01 -1.000000e+100 5.740624e+00 0.0000413 TRUE 0.0089426 TRUE VRTN NM_018228 NP_060698 inside exon inside 8500 inside exon 0 2 2 inside transcription region
11545 2108 0.32 FALSE
94 chr15 29992409 29992915 507
50.78236 25746.654 677513 678019 27 5499 0.8001972 0.3968442 0.0796844 0.0796844 2.6445759 -2.316203e+00 -2.316203e+00 2.736392e+00 0.0000440 TRUE 0.0094385 TRUE TJP1 NM_003257 NM_175610 NP_003248 NP_783297 XM_005254616 XM_005254617 XM_005254618 XM_005254619 XM_005254620 XM_005254621 XM_006720660 XM_006720661 XM_006725553 XM_006725554 XM_006725555 XM_006725556 XM_006725557 XM_006725558 XM_006725559 XM_006725560 XP_005254673 XP_005254674 XP_005254675 XP_005254676 XP_005254677 XP_005254678 XP_006720723 XP_006720724 XP_006725616 XP_006725617 XP_006725618 XP_006725619 XP_006725620 XP_006725621 XP_006725622 XP_006725623 inside exon inside 121791 inside exon 0 27 27 3'UTR
122349 120432 0.34 FALSE
95 chr1 160112673 160113131 459
55.77779 25602.008 20310687 20311145 554 3845 1.5294118 0.3856209 0.2688453 0.4692810 4.9938998 -5.204070e-01 2.832689e-01 3.694912e+00 0.0000445 TRUE 0.0094423 TRUE ATP1A2 NM_000702 NP_000693 inside exon inside 15331 inside exon 0 16 16 3'UTR
16032 13726 0.34 FALSE
96 chr20 31396033 31396639 607
41.58531 25242.286 2810514 2811120 85 24597 6.7500000 2.1235585 2.9779242 1.7515651 20.1469522 4.878232e-01 -2.778393e-01 3.246006e+00 0.0000476 TRUE 0.0099907 TRUE DNMT3B NM_001207055 NM_001207056 NM_006892 NM_175848 NM_175849 NM_175850 NP_001193984 NP_001193985 NP_008823 NP_787044 NP_787045 NP_787046 NA NA 0 NA NA NA 5 NA
0 0 0.35 FALSE
97 chr13 43444949 43445318 370
66.88154 24746.169 2383962 2384331 57 13438 0.8098649 0.0545946 0.0870270 0.0545946 3.0432432 6.727054e-01 0.000000e+00 5.800708e+00 0.0000505 TRUE 0.0104472 TRUE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 121089 NA NA NA 13 NA
105883 103915 0.36 FALSE
98 chrX 91356076 91356404 329
74.68653 24571.869 5969558 5969886 243 5561 1.9784195 0.1227964 0.0680851 0.0832827 7.6395137 -8.508566e-01 -5.601794e-01 5.959141e+00 0.0000513 TRUE 0.0104472 TRUE PCDH11X NM_001168360 NM_001168361 NM_001168362 NM_001168363 NM_014522 NM_032967 NM_032968 NM_032969 NP_001161832 NP_001161833 NP_001161834 NP_001161835 NP_055337 NP_116749 NP_116750 NP_116751 inside intron inside 265616 inside intron 99970 3 7 inside transcription region
787768 632811 0.36 FALSE
99 chrX 113706508 113706943 436
56.35750 24571.869 6942976 6943411 299 5443 5.4100917 0.2316514 0.2362385 0.5027523 20.6697248 2.828900e-02 1.117892e+00 6.479420e+00 0.0000513 TRUE 0.0104472 TRUE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 upstream upstream 111608 NA NA NA 6 NA
326073 180632 0.36 FALSE
100 chr2 5834933 5835266 334
73.18044 24442.265 204353 204686 16 8660 0.5862275 0.0000000 0.0604790 0.0000000 2.2844311 1.000000e+100 NaN 1.000000e+100 0.0000523 TRUE 0.0104668 TRUE SOX11 NM_003108 NP_003099 inside exon inside 2134 inside exon 0 1 1 3'UTR
8718 1325 0.36 FALSE
101 chr13 51745723 51746050 328
74.39013 24399.962 3595587 3595914 92 10662 0.9198171 0.0310976 0.0000000 0.0000000 3.6481707 -1.000000e+100 -1.000000e+100 6.874228e+00 0.0000525 TRUE 0.0104668 TRUE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.36 FALSE
102 chrX 113706007 113706362 356
67.85693 24157.066 6942526 6942881 299 5443 1.8387640 0.2331461 0.1308989 0.1674157 6.8235955 -8.327814e-01 -4.777990e-01 4.871226e+00 0.0000547 TRUE 0.0108127 TRUE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 upstream upstream 112189 NA NA NA 6 NA
326073 180632 0.36 FALSE
103 chr17 47130236 47130587 352
67.16237 23641.155 9734949 9735300 231 18864 1.0309659 0.0000000 0.0000000 0.0000000 4.1238636 NaN NaN 1.000000e+100 0.0000604 TRUE 0.0115930 TRUE IGF2BP1 NM_001160423 NM_006546 NP_001153895 NP_006537 XM_005256955 XP_005257012 inside exon inside 55462 inside exon 0 13 13 3'UTR
58733 51698 0.37 FALSE
104 chr13 56151776 56152168 393
60.13426 23632.764 3923714 3924106 121 13379 0.8391858 0.0000000 0.0000000 0.0000000 3.3567430 NaN NaN 1.000000e+100 0.0000604 TRUE 0.0115930 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.37 FALSE
105 chr7 83093794 83094086 293
80.64764 23629.759 8282349 8282641 218 5588 0.9822526 0.0000000 0.0000000 0.0689420 3.8600683 NaN 1.000000e+100 1.000000e+100 0.0000604 TRUE 0.0115930 TRUE SEMA3E NM_001178129 NM_012431 NP_001171600 NP_036563 XM_006716187 XP_006716250 inside intron inside 184393 inside intron -1712 4 17 inside transcription region
285257 280956 0.37 FALSE
106 chr1 55530234 55530488 255
91.96561 23451.231 9839764 9840018 252 890 0.6260784 0.0000000 0.0000000 0.0000000 2.5043137 NaN NaN 1.000000e+100 0.0000625 TRUE 0.0118844 TRUE PCSK9 NM_174936 NP_777596 NR_110451 NA NA 0 NA NA NA 10 NA
0 0 0.37 FALSE
107 chr12 59715674 59715980 307
75.13775 23067.291 7618611 7618917 197 6694 0.5486971 0.0000000 0.0000000 0.0000000 2.1947883 NaN NaN 1.000000e+100 0.0000677 TRUE 0.0126066 TRUE SLC16A7 NM_001270622 NM_001270623 NM_004731 NP_001257551 NP_001257552 NP_004722 NR_073055 NR_073056 XM_005269231 XM_006719693 XP_005269288 XP_006719756 upstream upstream 273841 NA NA NA 6 NA
193814 74877 0.37 FALSE
108 chr3 54672043 54672431 389
59.19801 23028.026 7095638 7096026 171 7351 4.6195373 0.3984576 0.4904884 0.7794344 16.8097686 2.997930e-01 9.680015e-01 5.398730e+00 0.0000680 TRUE 0.0126066 TRUE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.38 FALSE
109 chr6 123104862 123105128 267
86.17874 23009.725 11688954 11689220 327 4353 0.8370787 0.0000000 0.0000000 0.0000000 3.3483146 NaN NaN 1.000000e+100 0.0000682 TRUE 0.0126066 TRUE FABP7 NM_001446 NP_001437 XM_005266858 XP_005266915 inside exon inside 4216 inside exon 0 4 4 overlaps 3'UTR
4572 3972 0.38 FALSE
110 chr12 53298442 53298830 389
58.61494 22801.214 6338229 6338617 154 7844 2.5528278 0.4000000 0.4077121 0.0591260 9.3444730 2.755070e-02 -2.758136e+00 4.546041e+00 0.0000715 TRUE 0.0130566 TRUE KRT8 NM_001256282 NM_001256293 NM_002273 NP_001243211 NP_001243222 NP_002264 NR_045962 overlaps exon upstream inside 44820 overlaps exon upstream 0 2 9 overlaps 5' UTR
52679 7553 0.38 FALSE
111 chr12 8947733 8948024 292
77.84411 22730.479 1367587 1367878 52 8328 1.6837329 0.1191781 0.1082192 0.0000000 6.5075342 -1.391627e-01 -1.000000e+100 5.770920e+00 0.0000719 TRUE 0.0130566 TRUE RIMKLB NM_020734 NP_065785 XM_006719116 XM_006719117 XM_006719118 XM_006719119 XM_006719120 XM_006719121 XM_006719122 XM_006719123 XM_006719124 XM_006719125 XM_006719126 XM_006719127 XM_006719128 XP_006719179 XP_006719180 XP_006719181 XP_006719182 XP_006719183 XP_006719184 XP_006719185 XP_006719186 XP_006719187 XP_006719188 XP_006719189 XP_006719190 XP_006719191 NA NA 0 NA NA NA 9 NA
0 0 0.38 FALSE
112 chr12 77252526 77252808 283
79.53469 22508.318 9318545 9318827 243 7516 3.2035336 0.5893993 1.2565371 0.8084806 10.1597173 1.092136e+00 4.559678e-01 4.107471e+00 0.0000750 TRUE 0.0134944 TRUE CSRP2 NM_001321 NP_001312 XM_005268678 XM_006719258 XM_006719259 XP_005268735 XP_006719321 XP_006719322 inside exon inside 19991 inside exon 0 6 6 overlaps 3'UTR
20303 7308 0.38 FALSE
113 chr2 1635679 1636004 326
67.80443 22104.245 68440 68765 2 3615 1.3033742 0.6865031 0.2453988 0.0000000 4.2815951 -1.484138e+00 -1.000000e+100 2.640810e+00 0.0000810 TRUE 0.0144329 TRUE PXDN NM_012293 NP_036425 XM_005264707 XM_006711896 XP_005264764 XP_006711959 inside exon inside 112287 inside exon 0 23 23 3'UTR
112632 110251 0.38 FALSE
114 chr2 241655946 241656215 270
81.67407 22052.000 23642804 23643073 634 13166 1.2807407 0.0000000 0.1437037 0.0000000 4.9792593 1.000000e+100 NaN 1.000000e+100 0.0000817 TRUE 0.0144329 TRUE KIF1A NM_001244008 NM_004321 NP_001230937 NP_004312 XM_005247022 XM_005247023 XM_005247024 XM_005247026 XM_005247027 XM_005247028 XM_006712601 XM_006712602 XM_006712603 XM_006712604 XM_006712605 XP_005247079 XP_005247080 XP_005247081 XP_005247083 XP_005247084 XP_005247085 XP_006712664 XP_006712665 XP_006712666 XP_006712667 XP_006712668 inside exon inside 103510 inside exon 0 49 49 3'UTR
106544 80388 0.38 FALSE
115 chr12 8940289 8940565 277
78.65179 21786.546 1365993 1366269 52 8328 1.6061372 0.0851986 0.1776173 0.0000000 6.1617329 1.059872e+00 -1.000000e+100 6.176363e+00 0.0000877 TRUE 0.0153588 TRUE RIMKLB NM_020734 NP_065785 XM_006719116 XM_006719117 XM_006719118 XM_006719119 XM_006719120 XM_006719121 XM_006719122 XM_006719123 XM_006719124 XM_006719125 XM_006719126 XM_006719127 XM_006719128 XP_006719179 XP_006719180 XP_006719181 XP_006719182 XP_006719183 XP_006719184 XP_006719185 XP_006719186 XP_006719187 XP_006719188 XP_006719189 XP_006719190 XP_006719191 NA NA 0 NA NA NA 9 NA
0 0 0.39 FALSE
116 chr5 141691534 141691844 311
69.61142 21649.151 12324960 12325270 384 14439 0.7366559 0.0000000 0.0649518 0.0000000 2.8816720 1.000000e+100 NaN 1.000000e+100 0.0000912 TRUE 0.0157991 TRUE SPRY4 NM_001127496 NM_030964 NP_001120968 NP_112226 XM_005268518 XM_005268519 XM_006714798 XP_005268575 XP_005268576 XP_006714861 inside exon inside 12776 inside exon 0 3 3 3'UTR
14628 5556 0.40 FALSE
117 chr3 57127164 57127581 418
51.75050 21631.708 7280702 7281119 180 8154 0.7416268 0.0688995 0.0000000 0.0966507 2.8009569 -1.000000e+100 4.882865e-01 5.345282e+00 0.0000921 TRUE 0.0157991 TRUE IL17RD NM_017563 NP_060033 XM_005265238 XM_006713209 XP_005265295 XP_006713272 inside exon inside 76750 inside exon 0 14 14 3'UTR
80321 13261 0.40 FALSE
118 chr6 31132250 31132644 395
54.69255 21603.557 3618995 3619389 80 1705 16.0434177 1.9422785 3.5048101 1.3387342 57.3878481 8.515862e-01 -5.368805e-01 4.884923e+00 0.0000925 TRUE 0.0157991 TRUE POU5F1 NM_001173531 NM_001285986 NM_001285987 NM_002701 NM_203289 NP_001167002 NP_001272915 NP_001272916 NP_002692 NP_976034 inside exon inside 5807 inside exon 0 5 5 overlaps 3'UTR
6337 6019 0.40 FALSE
119 chr1 62676130 62676601 472
45.44083 21448.072 10232381 10232852 267 17384 6.9179025 1.8491525 3.6368644 2.1038136 20.0817797 9.758309e-01 1.861426e-01 3.440951e+00 0.0000963 TRUE 0.0162176 TRUE L1TD1 NM_001164835 NM_019079 NP_001158307 NP_061952 inside exon inside 15656 inside exon 0 5 5 inside transcription region
17527 4743 0.40 FALSE
120 chr7 83093042 83093321 280
76.46170 21409.276 8281648 8281927 218 5588 1.6289286 0.0000000 0.0714286 0.0721429 6.3721429 1.000000e+100 1.000000e+100 1.000000e+100 0.0000971 TRUE 0.0162176 TRUE SEMA3E NM_001178129 NM_012431 NP_001171600 NP_036563 XM_006716187 XP_006716250 inside intron inside 185158 inside intron -2477 4 17 inside transcription region
285257 280956 0.41 FALSE
121 chr12 53293559 53293849 291
73.45115 21374.285 6337572 6337862 154 7844 3.8817869 1.1230241 0.7635739 0.2838488 13.3567010 -5.565492e-01 -1.984194e+00 3.572103e+00 0.0000974 TRUE 0.0162176 TRUE KRT8 NM_001256282 NM_001256293 NM_002273 NP_001243211 NP_001243222 NP_002264 NR_045962 inside exon inside 49801 inside exon 0 6 9 inside transcription region
52679 7553 0.41 FALSE
122 chr11 67387645 67387979 335
63.64299 21320.402 7448990 7449324 229 2553 1.4961194 0.2411940 0.1808955 0.2238806 5.3385075 -4.150375e-01 -1.074647e-01 4.468170e+00 0.0000982 TRUE 0.0162186 TRUE DOC2GP NR_033791 NA NA 0 NA NA NA 5 NA
0 0 0.41 FALSE
123 chr1 223197946 223198272 327
65.03143 21265.278 26366643 26366969 754 8216 5.6269113 0.0856269 0.0146789 0.1412844 22.2660550 -2.544320e+00 7.224660e-01 8.022566e+00 0.0000995 TRUE 0.0162993 TRUE DISP1 NM_032890 NP_116279 XM_005273335 XM_005273336 XM_006711592 XM_006711593 XM_006711594 XM_006711595 XP_005273392 XP_005273393 XP_006711655 XP_006711656 XP_006711657 XP_006711658 downstream downstream 209515 NA NA NA 10 NA
190906 63148 0.41 FALSE
124 chr4 88843313 88843553 241
87.33936 21048.785 6770443 6770683 233 15558 1.8672199 0.0000000 0.0000000 0.0000000 7.4688797 NaN NaN 1.000000e+100 0.0001039 TRUE 0.0168489 TRUE SPP1 NM_000582 NM_001040058 NM_001040060 NM_001251829 NM_001251830 NP_000573 NP_001035147 NP_001035149 NP_001238758 NP_001238759 upstream upstream 53249 NA NA NA 7 NA
7761 6000 0.41 FALSE
125 chr3 54668373 54668634 262
80.18192 21007.663 7092494 7092755 171 7351 2.3643130 0.0000000 0.0000000 0.0000000 9.4572519 NaN NaN 1.000000e+100 0.0001045 TRUE 0.0168489 TRUE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.41 FALSE
126 chr2 241654499 241654764 266
78.84984 20974.059 23641384 23641649 634 13166 0.8045113 0.0000000 0.0000000 0.0000000 3.2180451 NaN NaN 1.000000e+100 0.0001057 TRUE 0.0168666 TRUE KIF1A NM_001244008 NM_004321 NP_001230937 NP_004312 XM_005247022 XM_005247023 XM_005247024 XM_005247026 XM_005247027 XM_005247028 XM_006712601 XM_006712602 XM_006712603 XM_006712604 XM_006712605 XP_005247079 XP_005247080 XP_005247081 XP_005247083 XP_005247084 XP_005247085 XP_006712664 XP_006712665 XP_006712666 XP_006712667 XP_006712668 inside exon inside 104961 inside exon 0 49 49 3'UTR
106544 80388 0.41 FALSE
127 chr16 3139519 3139795 277
75.61160 20944.412 1054385 1054661 35 10352 1.0440433 0.0440433 0.0729242 0.0000000 4.0592058 7.274741e-01 -1.000000e+100 6.526130e+00 0.0001063 TRUE 0.0168666 TRUE ZSCAN10 NM_001282415 NM_001282416 NM_032805 NP_001269344 NP_001269345 NP_116194 inside exon inside 9498 inside exon 0 5 5 inside transcription region
10398 1160 0.41 FALSE
128 chr3 57124044 57124288 245
85.09060 20847.197 7278420 7278664 180 8154 0.9628571 0.0000000 0.0914286 0.0000000 3.7600000 1.000000e+100 NaN 1.000000e+100 0.0001083 TRUE 0.0170412 TRUE IL17RD NM_017563 NP_060033 XM_005265238 XM_006713209 XP_005265295 XP_006713272 inside exon inside 80043 inside exon 0 14 14 3'UTR
80321 13261 0.41 FALSE
129 chr2 5835386 5835692 307
66.34755 20368.698 204781 205087 16 8660 0.8980456 0.0000000 0.0000000 0.0664495 3.5257329 NaN 1.000000e+100 1.000000e+100 0.0001195 TRUE 0.0186570 TRUE SOX11 NM_003108 NP_003099 inside exon inside 2587 inside exon 0 1 1 3'UTR
8718 1325 0.41 FALSE
130 chr1 223202201 223202478 278
72.56840 20174.014 26370172 26370449 754 8216 1.1839928 0.0000000 0.0000000 0.0366906 4.6992806 NaN 1.000000e+100 1.000000e+100 0.0001243 TRUE 0.0191279 TRUE DISP1 NM_032890 NP_116279 XM_005273335 XM_005273336 XM_006711592 XM_006711593 XM_006711594 XM_006711595 XP_005273392 XP_005273393 XP_006711655 XP_006711656 XP_006711657 XP_006711658 downstream downstream 213770 NA NA NA 10 NA
190906 63148 0.42 FALSE
131 chr15 79051563 79051766 204
98.77198 20149.485 8032465 8032668 235 8293 0.6906863 0.1735294 0.0000000 0.0000000 2.5892157 -1.000000e+100 -1.000000e+100 3.899263e+00 0.0001245 TRUE 0.0191279 TRUE ADAMTS7 NM_014272 NP_055087 XM_005254137 XM_005254138 XP_005254194 XP_005254195 inside exon inside 52007 inside exon 0 24 24 overlaps 3'UTR
52228 51799 0.42 FALSE
132 chr10 53794667 53795040 374
53.79952 20121.021 5589878 5590251 138 5761 1.8275401 0.1080214 0.3748663 0.0540107 6.7732620 1.795059e+00 -1.000000e+00 5.970462e+00 0.0001255 TRUE 0.0191279 TRUE PRKG1 NM_001098512 NM_006258 NP_001091982 NP_006249 XM_005269970 XM_005269971 XM_005269972 XP_005270027 XP_005270028 XP_005270029 inside intron inside 960433 inside intron 19204 6 18 inside transcription region
1223876 1219309 0.42 FALSE
133 chr6 167650683 167650996 314
64.03361 20106.553 16098222 16098535 425 3952 0.7358280 0.0000000 0.0000000 0.0000000 2.9433121 NaN NaN 1.000000e+100 0.0001263 TRUE 0.0191279 TRUE UNC93A NM_001143947 NM_018974 NP_001137419 NP_061847 upstream upstream 53807 NA NA NA 8 NA
24699 23962 0.42 FALSE
134 chr4 180090833 180091150 318
62.83461 19981.405 12310104 12310421 468 3689 0.7690252 0.0000000 0.0000000 0.0000000 3.0761006 NaN NaN 1.000000e+100 0.0001307 TRUE 0.0194981 TRUE LINC01098 NM_001085490 NR_028342 NA NA 0 NA NA NA 6 NA
0 0 0.42 FALSE
135 chr13 100637856 100638092 237
84.30310 19979.834 5450530 5450766 193 5501 0.9229958 0.0000000 0.0000000 0.0000000 3.6919831 NaN NaN 1.000000e+100 0.0001307 TRUE 0.0194981 TRUE ZIC2 NM_007129 NP_009060 inside exon inside 3830 inside exon 0 3 3 overlaps 3'UTR
4993 3617 0.42 FALSE
136 chr11 67394001 67394284 284
69.64580 19779.408 7449788 7450071 230 770 2.6063380 0.4098592 1.3838028 0.6816901 7.9500000 1.755438e+00 7.339879e-01 4.277755e+00 0.0001367 TRUE 0.0202391 TRUE NUDT8 NM_001243750 NM_181843 NP_001230679 NP_862826 downstream downstream 3124 NA NA NA 3 NA
1999 1606 0.42 FALSE
137 chr6 105530495 105530937 443
44.55293 19736.950 9857372 9857814 278 4151 0.6364560 0.0000000 0.0000000 0.0000000 2.5458239 NaN NaN 1.000000e+100 0.0001376 TRUE 0.0202391 TRUE LIN28B NM_001004317 NP_001004317 XM_006715477 XP_006715540 inside exon inside 124521 inside exon 0 4 4 3'UTR
125233 99901 0.42 FALSE
138 chr15 40092127 40092325 199
98.51468 19604.422 1663185 1663383 59 2951 0.8150754 0.3155779 0.0522613 0.0874372 2.8050251 -2.594181e+00 -1.851677e+00 3.151946e+00 0.0001412 TRUE 0.0206134 TRUE GPR176 NM_001271854 NM_001271855 NM_007223 NP_001258783 NP_001258784 NP_009154 XM_005254139 XM_006720379 XP_005254196 XP_006720442 inside exon inside 120768 inside exon 0 4 4 3'UTR
121870 118894 0.42 FALSE
139 chr15 26792379 26792641 263
73.99604 19460.959 475455 475717 11 4122 0.5060837 0.0000000 0.0000000 0.0000000 2.0243346 NaN NaN 1.000000e+100 0.0001466 TRUE 0.0212409 TRUE GABRB3 NM_000814 NM_001191320 NM_001191321 NM_001278631 NM_021912 NP_000805 NP_001178249 NP_001178250 NP_001265560 NP_068712 NR_103801 inside exon inside 392045 inside exon 0 10 10 3'UTR
395992 391643 0.42 FALSE
140 chr3 32937402 32937637 236
81.95429 19341.213 3398408 3398643 82 7451 1.3739407 0.4923729 0.1711864 0.0855932 4.7466102 -1.524183e+00 -2.524183e+00 3.269074e+00 0.0001509 TRUE 0.0217194 TRUE TRIM71 NM_001039111 NP_001034200 downstream downstream 77892 NA NA NA 4 NA
74261 73730 0.42 FALSE
141 chrX 91358468 91358787 320
60.28014 19289.645 5971733 5972052 243 5561 0.6662500 0.0000000 0.0000000 0.0000000 2.6650000 NaN NaN 1.000000e+100 0.0001539 TRUE 0.0218043 TRUE PCDH11X NM_001168360 NM_001168361 NM_001168362 NM_001168363 NM_014522 NM_032967 NM_032968 NM_032969 NP_001161832 NP_001161833 NP_001161834 NP_001161835 NP_055337 NP_116749 NP_116750 NP_116751 inside intron inside 268008 inside intron 97587 3 7 inside transcription region
787768 632811 0.43 FALSE
142 chr8 115258525 115258535 11
1752.20530 19274.258 8030168 8030178 291 2231 0.7863636 0.0363636 0.0545455 0.0000000 3.0545455 5.849625e-01 -1.000000e+100 6.392317e+00 0.0001542 TRUE 0.0218043 TRUE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 809283 NA NA NA 71 NA
1214083 1212083 0.43 FALSE
143 chr15 55903997 55904250 254
75.71119 19230.642 4216911 4217164 141 5154 0.7375984 0.0000000 0.0000000 0.0000000 2.9503937 NaN NaN 1.000000e+100 0.0001555 TRUE 0.0218043 TRUE PRTG NM_173814 NP_776175 XM_005254310 XM_005254311 XM_006720473 XP_005254367 XP_005254368 XP_006720536 XR_429451 inside exon inside 130927 inside exon 0 20 20 3'UTR
131438 122919 0.43 FALSE
144 chr12 66358333 66358673 341
56.31666 19203.980 8151023 8151363 215 2964 1.2438416 0.1571848 0.2862170 0.0000000 4.5319648 8.646481e-01 -1.000000e+100 4.849603e+00 0.0001565 TRUE 0.0218043 TRUE HMGA2 NM_001015886 NM_003483 NM_003484 NP_003474 NP_003475 XM_005269164 XM_006719620 XP_005269221 XP_006719683 XR_245958 inside exon inside 140093 inside exon 0 5 5 3'UTR
141831 138021 0.43 FALSE
145 chr15 55905004 55905415 412
46.55812 19181.945 4217662 4218073 141 5154 0.5822816 0.0000000 0.0000000 0.0000000 2.3291262 NaN NaN 1.000000e+100 0.0001569 TRUE 0.0218043 TRUE PRTG NM_173814 NP_776175 XM_005254310 XM_005254311 XM_006720473 XP_005254367 XP_005254368 XP_006720536 XR_429451 inside exon inside 129762 inside exon 0 20 20 3'UTR
131438 122919 0.43 FALSE
146 chr4 187163189 187163451 263
72.70776 19122.140 12655597 12655859 493 5193 1.1982890 0.1178707 0.2212928 0.0646388 4.3893536 9.087509e-01 -8.667335e-01 5.218731e+00 0.0001586 TRUE 0.0218788 TRUE KLKB1 NM_000892 NP_000883 XM_005262987 XM_006714213 XP_005263044 XP_006714276 inside intron inside 14517 inside intron -3670 7 15 inside transcription region
30953 25911 0.43 FALSE
147 chr3 32936380 32936810 431
44.09218 19003.729 3397461 3397891 82 7451 1.0386311 0.2904872 0.2116009 0.0000000 3.6524362 -4.571288e-01 -1.000000e+100 3.652312e+00 0.0001636 TRUE 0.0223339 TRUE TRIM71 NM_001039111 NP_001034200 downstream downstream 76870 NA NA NA 4 NA
74261 73730 0.43 FALSE
148 chr14 93397710 93398047 338
56.17366 18986.697 8679091 8679428 253 12111 1.2159763 0.0000000 0.0000000 0.1112426 4.7526627 NaN 1.000000e+100 1.000000e+100 0.0001641 TRUE 0.0223339 TRUE CHGA NM_001275 NP_001266 XM_005267292 XM_006725160 XP_005267349 XP_006725223 inside intron inside 8265 inside intron 668 6 7 inside transcription region
12193 11524 0.43 FALSE
149 chr1 17301039 17301322 284
66.37672 18850.988 2835158 2835441 74 6061 1.9545775 0.1422535 0.1985915 0.0119718 7.4654930 4.813399e-01 -3.570749e+00 5.713701e+00 0.0001686 TRUE 0.0226563 TRUE MFAP2 NM_001135247 NM_001135248 NM_002403 NM_017459 NP_001128719 NP_001128720 NP_002394 NP_059453 inside exon inside 6759 inside exon 0 9 9 3'UTR
7082 3353 0.43 FALSE
150 chr3 54667104 54667361 258
72.91943 18813.212 7091550 7091807 171 7351 0.8728682 0.0000000 0.0000000 0.0000000 3.4914729 NaN NaN 1.000000e+100 0.0001698 TRUE 0.0226563 TRUE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.43 FALSE
151 chr15 55907499 55907772 274
68.53608 18778.886 4219326 4219599 141 5154 0.5806569 0.0000000 0.0000000 0.0000000 2.3226277 NaN NaN 1.000000e+100 0.0001715 TRUE 0.0226563 TRUE PRTG NM_173814 NP_776175 XM_005254310 XM_005254311 XM_006720473 XP_005254367 XP_005254368 XP_006720536 XR_429451 inside exon inside 127405 inside exon 0 20 20 3'UTR
131438 122919 0.44 FALSE
152 chr1 63786600 63786861 262
71.63101 18767.325 10288923 10289184 272 2673 1.0572519 0.0000000 0.0000000 0.0000000 4.2290076 NaN NaN 1.000000e+100 0.0001720 TRUE 0.0226563 TRUE FOXD3 NM_012183 NP_036315 promoter promoter 1869 NA NA NA 1 NA
2067 1436 0.44 FALSE
153 chr19 17713281 17713584 304
61.63162 18736.011 4871723 4872026 149 4082 0.8564145 0.0664474 0.0000000 0.0000000 3.3592105 -1.000000e+100 -1.000000e+100 5.659766e+00 0.0001741 TRUE 0.0226563 TRUE UNC13A NM_001080421 NP_001073890 XM_006722692 XP_006722755 inside exon inside 85466 inside exon 0 44 44 3'UTR
86913 82145 0.44 FALSE
154 chr3 54669413 54669639 227
82.46499 18719.552 7093485 7093711 171 7351 0.7030837 0.0000000 0.0000000 0.0000000 2.8123348 NaN NaN 1.000000e+100 0.0001746 TRUE 0.0226563 TRUE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.44 FALSE
155 chr22 31531180 31531524 345
54.25398 18717.623 2714029 2714373 72 5042 0.6847826 0.0000000 0.0000000 0.0000000 2.7391304 NaN NaN 1.000000e+100 0.0001748 TRUE 0.0226563 TRUE PLA2G3 NM_015715 NP_056530 inside exon inside 4945 inside exon 0 7 7 3'UTR
5676 4631 0.44 FALSE
156 chr9 133996715 133997019 305
61.31252 18700.319 11060029 11060333 391 5341 0.9900000 0.0111475 0.0616393 0.2780328 3.6091803 2.467126e+00 4.640458e+00 8.338802e+00 0.0001759 TRUE 0.0226563 TRUE AIF1L NM_001002260 NM_001185095 NM_001185096 NM_031426 NP_001172024 NP_001172025 NP_113614 NR_033701 inside exon inside 18525 inside exon 0 5 5 3'UTR
20349 17441 0.44 FALSE
157 chr3 57125494 57125759 266
70.25792 18688.608 7279635 7279900 180 8154 0.6473684 0.0000000 0.1248120 0.0000000 2.4646617 1.000000e+100 NaN 1.000000e+100 0.0001766 TRUE 0.0226563 TRUE IL17RD NM_017563 NP_060033 XM_005265238 XM_006713209 XP_005265295 XP_006713272 inside exon inside 78572 inside exon 0 14 14 3'UTR
80321 13261 0.44 FALSE
158 chr14 77597646 77597924 279
66.53822 18564.164 7116589 7116867 221 2474 0.6973118 0.0000000 0.0000000 0.0000000 2.7892473 NaN NaN 1.000000e+100 0.0001816 TRUE 0.0231540 TRUE ZDHHC22 NM_174976 NP_777636 XM_006720119 XM_006720120 XP_006720182 XP_006720183 inside exon inside 10210 inside exon 0 3 3 3'UTR
10521 6055 0.45 FALSE
159 chr12 3152762 3153046 285
64.41004 18356.861 516732 517016 17 7995 0.5078947 0.0000000 0.0000000 0.0000000 2.0315789 NaN NaN 1.000000e+100 0.0001895 TRUE 0.0240155 TRUE TEAD4 NM_003213 NM_201441 NM_201443 NP_003204 NP_958849 NP_958851 downstream downstream 84284 NA NA NA 13 NA
81364 45711 0.45 FALSE
160 chr4 187517694 187517992 299
61.27940 18322.540 12660219 12660517 495 8642 0.4882943 0.0548495 0.0000000 0.0000000 1.8983278 -1.000000e+100 -1.000000e+100 5.113107e+00 0.0001908 TRUE 0.0240288 TRUE FAT1 NM_005245 NP_005236 XM_005262834 XM_005262835 XM_006714139 XP_005262891 XP_005262892 XP_006714202 inside exon inside 126995 inside exon 0 25 27 inside transcription region
136050 121235 0.45 FALSE
161 chr12 8940981 8941259 279
65.48813 18271.188 1366629 1366907 52 8328 0.9578853 0.0000000 0.0000000 0.0000000 3.8315412 NaN NaN 1.000000e+100 0.0001921 TRUE 0.0240419 TRUE RIMKLB NM_020734 NP_065785 XM_006719116 XM_006719117 XM_006719118 XM_006719119 XM_006719120 XM_006719121 XM_006719122 XM_006719123 XM_006719124 XM_006719125 XM_006719126 XM_006719127 XM_006719128 XP_006719179 XP_006719180 XP_006719181 XP_006719182 XP_006719183 XP_006719184 XP_006719185 XP_006719186 XP_006719187 XP_006719188 XP_006719189 XP_006719190 XP_006719191 NA NA 0 NA NA NA 9 NA
0 0 0.45 FALSE
162 chr4 55944827 55945099 273
66.66094 18198.436 4546694 4546966 135 3976 0.7190476 0.1289377 0.0000000 0.1457875 2.6014652 -1.000000e+100 1.771930e-01 4.334578e+00 0.0001959 TRUE 0.0243575 TRUE KDR NM_002253 NP_002244 inside exon inside 46663 inside exon 0 30 30 3'UTR
47336 45352 0.45 FALSE
163 chr17 42875872 42876263 392
45.78819 17948.971 8246543 8246934 204 7091 0.7116071 0.0000000 0.0816327 0.0780612 2.6867347 1.000000e+100 1.000000e+100 1.000000e+100 0.0002082 TRUE 0.0257317 TRUE GJC1 NM_001080383 NM_005497 NP_001073852 NP_005488 XM_005256920 XM_005256921 XP_005256977 XP_005256978 inside exon inside 31916 inside exon 0 3 3 3'UTR
32363 1190 0.46 FALSE
164 chr19 45412265 45412647 383
46.28510 17727.193 9397278 9397660 286 3581 3.7096606 0.7263708 0.4699739 0.3618799 13.2804178 -6.281255e-01 -1.005195e+00 4.192451e+00 0.0002204 TRUE 0.0270692 TRUE APOE NM_000041 NP_000032 XM_005258867 XP_005258924 inside exon inside 3226 inside exon 0 4 4 overlaps 3'UTR
3611 2625 0.46 FALSE
165 chr17 42877316 42877523 208
84.31504 17537.529 8247521 8247728 204 7091 0.7240385 0.0298077 0.0000000 0.0000000 2.8663462 -1.000000e+100 -1.000000e+100 6.587384e+00 0.0002296 TRUE 0.0279242 TRUE GJC1 NM_001080383 NM_005497 NP_001073852 NP_005488 XM_005256920 XM_005256921 XP_005256977 XP_005256978 inside exon inside 30656 inside exon 0 3 3 3'UTR
32363 1190 0.46 FALSE
166 chr16 3142738 3142928 191
91.78714 17531.344 1056170 1056360 35 10352 0.7159686 0.0000000 0.0000000 0.0680628 2.7958115 NaN 1.000000e+100 1.000000e+100 0.0002301 TRUE 0.0279242 TRUE ZSCAN10 NM_001282415 NM_001282416 NM_032805 NP_001269344 NP_001269345 NP_116194 inside intron inside 6365 inside intron 421 2 5 5' UTR
10398 1160 0.46 FALSE
167 chr1 62672335 62672750 416
41.83657 17404.012 10230631 10231046 267 17384 4.7506010 2.0971154 1.9677885 1.6754808 13.2620192 -9.183110e-02 -3.238311e-01 2.660822e+00 0.0002377 TRUE 0.0286767 TRUE L1TD1 NM_001164835 NM_019079 NP_001158307 NP_061952 inside exon inside 11861 inside exon 0 4 5 inside transcription region
17527 4743 0.47 FALSE
168 chr2 202901589 202901916 328
52.90786 17353.776 19695981 19696308 532 4463 3.2621951 1.5646341 1.0371951 0.7384146 9.7085366 -5.931380e-01 -1.083322e+00 2.633428e+00 0.0002406 TRUE 0.0288561 TRUE FZD7 NM_003507 NP_003498 inside exon inside 2279 inside exon 0 1 1 3'UTR
3850 1724 0.47 FALSE
169 chrX 113702145 113702508 364
47.54117 17304.987 6939366 6939729 299 5443 1.0049451 0.0554945 0.0412088 0.0390110 3.8840659 -4.293928e-01 -5.084644e-01 6.129079e+00 0.0002429 TRUE 0.0289099 TRUE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 upstream upstream 116043 NA NA NA 6 NA
326073 180632 0.47 FALSE
170 chr10 53795194 53795486 293
58.99246 17284.791 5590361 5590653 138 5761 1.6184300 0.0000000 0.0000000 0.0000000 6.4737201 NaN NaN 1.000000e+100 0.0002449 TRUE 0.0289099 TRUE PRKG1 NM_001098512 NM_006258 NP_001091982 NP_006249 XM_005269970 XM_005269971 XM_005269972 XP_005270027 XP_005270028 XP_005270029 inside intron inside 960960 inside intron 18758 6 18 inside transcription region
1223876 1219309 0.47 FALSE
171 chr2 1636572 1636933 362
47.63749 17244.772 69331 69692 2 3615 1.2704420 1.1469613 0.0000000 0.0000000 3.9348066 -1.000000e+100 -1.000000e+100 1.778476e+00 0.0002471 TRUE 0.0289099 TRUE PXDN NM_012293 NP_036425 XM_005264707 XM_006711896 XP_005264764 XP_006711959 inside exon inside 111358 inside exon 0 23 23 3'UTR
112632 110251 0.47 FALSE
172 chr16 9764418 9764686 269
64.03400 17225.145 1951177 1951445 53 7029 0.6063197 0.0000000 0.0000000 0.0000000 2.4252788 NaN NaN 1.000000e+100 0.0002479 TRUE 0.0289099 TRUE GRIN2A NM_000833 NM_001134407 NM_001134408 NP_000824 NP_001127879 NP_001127880 XM_005255267 XM_005255268 XP_005255324 XP_005255325 downstream downstream 511577 NA NA NA 13 NA
428998 417262 0.47 FALSE
173 chr12 53291022 53291402 381
45.19639 17219.825 6336911 6337291 154 7844 3.4257218 0.7265092 0.6435696 0.7270341 11.6057743 -1.748850e-01 1.042000e-03 3.997718e+00 0.0002483 TRUE 0.0289099 TRUE KRT8 NM_001256282 NM_001256293 NM_002273 NP_001243211 NP_001243222 NP_002264 NR_045962 inside exon inside 52248 inside exon 0 9 9 overlaps 3'UTR
52679 7553 0.47 FALSE
174 chr5 141702405 141702576 172
99.82780 17170.382 12326979 12327150 384 14439 0.5017442 0.0000000 0.0000000 0.0000000 2.0069767 NaN NaN 1.000000e+100 0.0002522 TRUE 0.0290650 TRUE SPRY4 NM_001127496 NM_030964 NP_001120968 NP_112226 XM_005268518 XM_005268519 XM_006714798 XP_005268575 XP_005268576 XP_006714861 inside intron inside 2044 inside intron -1833 1 3 5' UTR
14628 5556 0.47 FALSE
175 chr12 14858720 14859012 293
58.59039 17166.984 2665858 2666150 70 3841 3.2059727 0.4600683 1.0170648 0.9235495 10.4232082 1.144492e+00 1.005341e+00 4.501808e+00 0.0002525 TRUE 0.0290650 TRUE GUCY2C NM_004963 NP_004954 upstream upstream 9201 NA NA NA 27 NA
83951 83331 0.47 FALSE
176 chr1 82456275 82456629 355
47.78197 16962.598 11405145 11405499 322 1848 0.8495775 0.1588732 0.0000000 0.0000000 3.2394366 -1.000000e+100 -1.000000e+100 4.349795e+00 0.0002638 TRUE 0.0301213 TRUE LPHN2 NM_012302 NP_036434 XM_005270666 XM_005270667 XM_005270668 XM_005270670 XM_005270673 XM_005270674 XM_006710485 XM_006710486 XM_006710487 XM_006710488 XM_006710489 XM_006710490 XM_006710491 XM_006710492 XM_006710493 XM_006710494 XM_006710495 XM_006710496 XM_006710497 XP_005270723 XP_005270724 XP_005270725 XP_005270727 XP_005270730 XP_005270731 XP_006710548 XP_006710549 XP_006710550 XP_006710551 XP_006710552 XP_006710553 XP_006710554 XP_006710555 XP_006710556 XP_006710557 XP_006710558 XP_006710559 XP_006710560 inside exon inside 40402 inside exon 0 17 17 inside transcription region
42234 40867 0.47 FALSE
177 chr13 43443659 43443896 238
71.25309 16958.235 2382869 2383106 57 13438 2.8855042 0.0000000 0.1546218 0.0000000 11.3873950 1.000000e+100 NaN 1.000000e+100 0.0002647 TRUE 0.0301213 TRUE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 122511 NA NA NA 13 NA
105883 103915 0.47 FALSE
178 chr20 38898173 38898369 197
85.31833 16807.712 4400851 4401047 116 5560 0.8195431 0.0000000 0.0000000 0.0000000 3.2781726 NaN NaN 1.000000e+100 0.0002745 TRUE 0.0310719 TRUE MAFB NM_005461 NP_005452 downstream downstream 419507 NA NA NA 1 NA
3359 971 0.47 FALSE
179 chr15 55904491 55904733 243
69.04419 16777.738 4217348 4217590 141 5154 0.6771605 0.0000000 0.0000000 0.0000000 2.7086420 NaN NaN 1.000000e+100 0.0002771 TRUE 0.0311905 TRUE PRTG NM_173814 NP_776175 XM_005254310 XM_005254311 XM_006720473 XP_005254367 XP_005254368 XP_006720536 XR_429451 inside exon inside 130444 inside exon 0 20 20 3'UTR
131438 122919 0.47 FALSE
180 chr13 56149564 56149785 222
75.29906 16716.392 3921997 3922218 121 13379 0.6331081 0.0000000 0.0000000 0.0000000 2.5324324 NaN NaN 1.000000e+100 0.0002827 TRUE 0.0315100 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.48 FALSE
181 chr11 27639180 27639475 296
56.40421 16695.648 2971180 2971475 79 3618 0.8185811 0.1364865 0.0979730 0.0000000 3.0398649 -4.783024e-01 -1.000000e+100 4.477177e+00 0.0002844 TRUE 0.0315100 TRUE BDNF-AS NR_002832 NR_033312 NR_033313 NR_033314 NR_033315 NA NA 0 NA NA NA 7 NA
0 0 0.48 FALSE
182 chr1 26751794 26751978 185
90.00906 16651.676 4578100 4578284 115 4415 3.7805405 0.0000000 0.1091892 0.1081081 14.9048649 1.000000e+100 1.000000e+100 1.000000e+100 0.0002874 TRUE 0.0315100 TRUE LIN28A NM_024674 NP_078950 XM_006710899 XM_006710900 XP_006710962 XP_006710963 inside exon inside 14525 inside exon 0 3 4 inside transcription region
18950 15566 0.48 FALSE
183 chr19 45411017 45411209 193
86.23534 16643.420 9396571 9396763 286 3581 8.4696891 1.0455959 0.7388601 0.7979275 31.2963731 -5.009522e-01 -3.899958e-01 4.903598e+00 0.0002875 TRUE 0.0315100 TRUE APOE NM_000041 NP_000032 XM_005258867 XP_005258924 inside exon inside 1978 inside exon 0 3 4 inside transcription region
3611 2625 0.48 FALSE
184 chr5 12654924 12655113 190
87.51284 16627.439 572315 572504 28 11045 0.5563158 0.0000000 0.0000000 0.0000000 2.2252632 NaN NaN 1.000000e+100 0.0002880 TRUE 0.0315100 TRUE LINC01194 NR_033383 NA NA 0 NA NA NA 3 NA
0 0 0.48 FALSE
185 chr16 78011541 78011920 380
43.63403 16580.931 10468507 10468886 272 2496 0.8690789 0.0000000 0.1631579 0.0000000 3.3131579 1.000000e+100 NaN 1.000000e+100 0.0002909 TRUE 0.0315100 TRUE VAT1L NM_020927 NP_065978 inside exon inside 189058 inside exon 0 9 9 overlaps 3'UTR
191518 189012 0.48 FALSE
186 chr16 51171047 51171331 285
58.17580 16580.103 7327827 7328111 178 4772 0.9682456 0.0000000 0.0000000 0.0000000 3.8729825 NaN NaN 1.000000e+100 0.0002909 TRUE 0.0315100 TRUE SALL1 NM_001127892 NM_002968 NP_001121364 NP_002959 XM_006721241 XP_006721304 inside exon inside 13852 inside exon 0 3 3 inside transcription region
14160 4818 0.48 FALSE
187 chr3 181432039 181432215 177
93.48183 16546.284 16398282 16398458 513 2487 1.6810734 0.0000000 0.0000000 0.0000000 6.7242938 NaN NaN 1.000000e+100 0.0002927 TRUE 0.0315337 TRUE SOX2 NM_003106 NP_003097 inside exon inside 2327 inside exon 0 1 1 3'UTR
2511 953 0.48 FALSE
188 chr12 97958447 97958752 306
53.61679 16406.737 10660467 10660772 300 1005 0.5341503 0.0000000 0.0000000 0.0000000 2.1366013 NaN NaN 1.000000e+100 0.0003023 TRUE 0.0322374 TRUE RMST NR_024037 NA NA 0 NA NA NA 7 NA
0 0 0.48 FALSE
189 chr13 56148503 56148852 350
46.86852 16403.982 3921119 3921468 121 13379 0.6100000 0.0000000 0.0000000 0.0000000 2.4400000 NaN NaN 1.000000e+100 0.0003025 TRUE 0.0322374 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.48 FALSE
190 chr12 66358719 66358869 151
108.46248 16377.834 8151401 8151551 215 2964 1.3125828 0.0980132 0.0145695 0.0079470 5.1298013 -2.750022e+00 -3.624491e+00 5.709782e+00 0.0003047 TRUE 0.0323085 TRUE HMGA2 NM_001015886 NM_003483 NM_003484 NP_003474 NP_003475 XM_005269164 XM_006719620 XP_005269221 XP_006719683 XR_245958 inside exon inside 140479 inside exon 0 5 5 3'UTR
141831 138021 0.48 FALSE
191 chr2 1637465 1637799 335
48.80229 16348.767 70123 70457 2 3615 0.7753731 0.1856716 0.0000000 0.0298507 2.8859701 -1.000000e+100 -2.636915e+00 3.958231e+00 0.0003065 TRUE 0.0323276 TRUE PXDN NM_012293 NP_036425 XM_005264707 XM_006711896 XP_005264764 XP_006711959 inside exon inside 110492 inside exon 0 23 23 3'UTR
112632 110251 0.48 FALSE
192 chr17 47127429 47127676 248
65.22013 16174.592 9732837 9733084 231 18864 0.5397177 0.0000000 0.0000000 0.0000000 2.1588710 NaN NaN 1.000000e+100 0.0003222 TRUE 0.0338101 TRUE IGF2BP1 NM_001160423 NM_006546 NP_001153895 NP_006537 XM_005256955 XP_005257012 inside exon inside 52655 inside exon 0 13 13 3'UTR
58733 51698 0.48 FALSE
193 chr12 86272123 86272347 225
71.65176 16121.645 9619548 9619772 270 4255 0.7911111 0.0968889 0.0000000 0.0000000 3.0675556 -1.000000e+100 -1.000000e+100 4.984614e+00 0.0003268 TRUE 0.0341091 TRUE NTS NM_006183 NP_006174 inside exon inside 4050 inside exon 0 3 4 inside transcription region
8697 7971 0.48 FALSE
194 chr8 72615278 72615449 172
93.20441 16031.158 5588144 5588315 201 1824 0.7985465 0.0000000 0.0000000 0.0000000 3.1941860 NaN NaN 1.000000e+100 0.0003354 TRUE 0.0348260 TRUE MSC NM_005098 NP_005089 downstream downstream 141282 NA NA NA 2 NA
2954 1517 0.48 FALSE
195 chr15 26790432 26790719 288
55.55003 15998.410 474285 474572 11 4122 0.6944444 0.0000000 0.0000000 0.0000000 2.7777778 NaN NaN 1.000000e+100 0.0003391 TRUE 0.0348541 TRUE GABRB3 NM_000814 NM_001191320 NM_001191321 NM_001278631 NM_021912 NP_000805 NP_001178249 NP_001178250 NP_001265560 NP_068712 NR_103801 inside exon inside 393967 inside exon 0 10 10 3'UTR
395992 391643 0.48 FALSE
196 chrX 110790653 110790777 125
127.98424 15998.030 6862497 6862621 294 1078 0.6812000 0.0000000 0.1616000 0.0000000 2.5632000 1.000000e+100 NaN 1.000000e+100 0.0003391 TRUE 0.0348541 TRUE LINC00890 NR_033974 NA NA 0 NA NA NA 3 NA
0 0 0.48 FALSE
197 chr4 79464631 79465008 378
42.18790 15947.025 5859005 5859382 207 3243 0.8388889 0.0000000 0.1195767 0.0000000 3.2359788 1.000000e+100 NaN 1.000000e+100 0.0003438 TRUE 0.0351582 TRUE FRAS1 NM_001166133 NM_020875 NM_025074 NM_032863 NM_206841 NP_001159605 NP_079350 XM_006714314 XM_006714315 XM_006714316 XM_006714317 XP_006714377 XP_006714378 XP_006714379 XP_006714380 inside exon inside 485907 inside exon 0 74 74 3'UTR
486699 483114 0.49 FALSE
198 chr16 65267282 65267527 246
64.49669 15866.185 8197449 8197694 214 5478 0.7569106 0.0000000 0.0000000 0.0000000 3.0276423 NaN NaN 1.000000e+100 0.0003510 TRUE 0.0353071 TRUE LINC00922 NM_001101346 NR_027755 NA NA 0 NA NA NA 6 NA
0 0 0.49 FALSE
199 chr2 5834481 5834771 291
54.52173 15865.825 204060 204350 16 8660 0.7340206 0.0116838 0.1353952 0.0694158 2.7195876 3.534589e+00 2.570749e+00 7.862729e+00 0.0003510 TRUE 0.0353071 TRUE SOX11 NM_003108 NP_003099 inside exon inside 1682 inside exon 0 1 1 3'UTR
8718 1325 0.49 FALSE
200 chr3 54669034 54669284 251
63.19846 15862.813 7093131 7093381 171 7351 0.7330677 0.0000000 0.0000000 0.0000000 2.9322709 NaN NaN 1.000000e+100 0.0003513 TRUE 0.0353071 TRUE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.49 FALSE
201 chr12 59716601 59716802 202
78.46326 15849.578 7619014 7619215 197 6694 0.5435644 0.0000000 0.0000000 0.0000000 2.1742574 NaN NaN 1.000000e+100 0.0003537 TRUE 0.0353071 TRUE SLC16A7 NM_001270622 NM_001270623 NM_004731 NP_001257551 NP_001257552 NP_004722 NR_073055 NR_073056 XM_005269231 XM_006719693 XP_005269288 XP_006719756 upstream upstream 273019 NA NA NA 6 NA
193814 74877 0.49 FALSE
202 chr4 41259209 41259371 163
97.17744 15839.922 3752656 3752818 117 11482 0.9107362 0.0000000 0.0000000 0.0000000 3.6429448 NaN NaN 1.000000e+100 0.0003540 TRUE 0.0353071 TRUE UCHL1 NM_004181 NP_004172 inside exon inside 311 inside exon 0 2 8 5' UTR
11548 7357 0.49 FALSE
203 chr13 51747682 51747849 168
94.02348 15795.945 3597419 3597586 92 10662 3.1461310 0.0000000 0.0321429 0.1976190 12.3547619 1.000000e+100 1.000000e+100 1.000000e+100 0.0003589 TRUE 0.0355697 TRUE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.49 FALSE
204 chr15 78640269 78640559 291
54.21123 15775.468 7976705 7976995 233 291 2.0338488 0.1257732 0.0000000 0.0000000 8.0096220 -1.000000e+100 -1.000000e+100 5.992838e+00 0.0003602 TRUE 0.0355697 TRUE CRABP1 NM_004378 NP_004369 inside exon inside 7603 inside exon 0 4 4 overlaps 3'UTR
7906 7548 0.49 FALSE
205 chr15 65623388 65623552 165
95.20893 15709.474 5965529 5965693 184 8664 0.8603030 0.0000000 0.0000000 0.0000000 3.4412121 NaN NaN 1.000000e+100 0.0003677 TRUE 0.0361295 TRUE IGDCC3 NM_004884 NP_004875 inside exon inside 25158 inside exon 0 8 12 inside transcription region
26982 6564 0.49 FALSE
206 chr7 83093323 83093530 208
75.17445 15636.285 8281928 8282135 218 5588 0.7120192 0.0000000 0.0000000 0.0000000 2.8480769 NaN NaN 1.000000e+100 0.0003740 TRUE 0.0365728 TRUE SEMA3E NM_001178129 NM_012431 NP_001171600 NP_036563 XM_006716187 XP_006716250 inside intron inside 184949 inside intron -2268 4 17 inside transcription region
285257 280956 0.49 FALSE
207 chr5 141691149 141691465 317
49.05286 15549.758 12324643 12324959 384 14439 1.2009464 0.0643533 0.0000000 0.0000000 4.7394322 -1.000000e+100 -1.000000e+100 6.202556e+00 0.0003836 TRUE 0.0371794 TRUE SPRY4 NM_001127496 NM_030964 NP_001120968 NP_112226 XM_005268518 XM_005268519 XM_006714798 XP_005268575 XP_005268576 XP_006714861 inside exon inside 13155 inside exon 0 3 3 3'UTR
14628 5556 0.49 FALSE
208 chr2 241656293 241656499 207
75.08310 15542.202 23643095 23643301 634 13166 0.5500000 0.0000000 0.0000000 0.0000000 2.2000000 NaN NaN 1.000000e+100 0.0003839 TRUE 0.0371794 TRUE KIF1A NM_001244008 NM_004321 NP_001230937 NP_004312 XM_005247022 XM_005247023 XM_005247024 XM_005247026 XM_005247027 XM_005247028 XM_006712601 XM_006712602 XM_006712603 XM_006712604 XM_006712605 XP_005247079 XP_005247080 XP_005247081 XP_005247083 XP_005247084 XP_005247085 XP_006712664 XP_006712665 XP_006712666 XP_006712667 XP_006712668 inside exon inside 103226 inside exon 0 49 49 3'UTR
106544 80388 0.49 FALSE
209 chr22 45938035 45938163 129
120.31276 15520.346 5802240 5802368 151 2298 2.2779070 0.0496124 0.5503876 0.4682171 8.0434109 3.471675e+00 3.238405e+00 7.340963e+00 0.0003868 TRUE 0.0372144 TRUE FBLN1 NM_001996 NM_006485 NM_006486 NM_006487 NP_001987 NP_006476 NP_006477 NP_006478 inside exon inside 39316 inside exon 0 10 17 inside transcription region
98295 97460 0.49 FALSE
210 chr1 156640863 156641065 203
76.41499 15512.243 19869882 19870084 536 8487 1.3009852 0.9004926 0.0000000 0.0679803 4.2354680 -1.000000e+100 -3.727526e+00 2.233735e+00 0.0003879 TRUE 0.0372144 TRUE NES NM_006617 NP_006608 inside exon inside 6124 inside exon 0 4 4 inside transcription region
8633 7942 0.49 FALSE
211 chr2 47606908 47607108 201
77.03507 15484.050 5239078 5239278 126 1012 1.1281095 0.0000000 0.0338308 0.1482587 4.3303483 1.000000e+100 1.000000e+100 1.000000e+100 0.0003910 TRUE 0.0373323 TRUE EPCAM NM_002354 NP_002345 inside exon inside 10621 inside exon 0 7 9 inside transcription region
17880 17107 0.49 FALSE
212 chr13 100637200 100637363 164
94.11675 15435.148 5450272 5450435 193 5501 1.0506098 0.0000000 0.0000000 0.0000000 4.2024390 NaN NaN 1.000000e+100 0.0003954 TRUE 0.0375724 TRUE ZIC2 NM_007129 NP_009060 inside exon inside 3174 inside exon 0 2 3 inside transcription region
4993 3617 0.49 FALSE
213 chr10 53796051 53796454 404
38.12607 15402.930 5590917 5591320 138 5761 1.1121287 0.2915842 0.0985149 0.0485149 4.0099010 -1.565499e+00 -2.587414e+00 3.781582e+00 0.0003982 TRUE 0.0376568 TRUE PRKG1 NM_001098512 NM_006258 NP_001091982 NP_006249 XM_005269970 XM_005269971 XM_005269972 XP_005270027 XP_005270028 XP_005270029 inside intron inside 961817 inside intron 17790 6 18 inside transcription region
1223876 1219309 0.49 FALSE
214 chr4 187518012 187518253 242
63.47009 15359.763 12660537 12660778 495 8642 0.7297521 0.0677686 0.0000000 0.0000000 2.8512397 -1.000000e+100 -1.000000e+100 5.394829e+00 0.0004024 TRUE 0.0378778 TRUE FAT1 NM_005245 NP_005236 XM_005262834 XM_005262835 XM_006714139 XP_005262891 XP_005262892 XP_006714202 inside exon inside 126734 inside exon 0 25 27 inside transcription region
136050 121235 0.49 FALSE
215 chr6 114744658 114744839 182
84.23988 15331.658 11096100 11096281 302 5708 1.7788462 0.0000000 0.0000000 0.0000000 7.1153846 NaN NaN 1.000000e+100 0.0004066 TRUE 0.0380869 TRUE HS3ST5 NM_153612 NP_705840 XM_006715379 XP_006715442 upstream upstream 81118 NA NA NA 5 NA
286790 5588 0.50 FALSE
216 chr13 43442889 43443130 242
63.28694 15315.440 2382406 2382647 57 13438 2.3822314 0.2297521 0.3338843 0.1661157 8.7991736 5.392704e-01 -4.678894e-01 5.259218e+00 0.0004084 TRUE 0.0380869 TRUE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 123277 NA NA NA 13 NA
105883 103915 0.50 FALSE
217 chr20 31396719 31397160 442
34.47672 15238.711 2811200 2811641 85 24597 6.9459276 2.0217195 2.9633484 3.3936652 19.4049774 5.516454e-01 7.472614e-01 3.262772e+00 0.0004168 TRUE 0.0386944 TRUE DNMT3B NM_001207055 NM_001207056 NM_006892 NM_175848 NM_175849 NM_175850 NP_001193984 NP_001193985 NP_008823 NP_787044 NP_787045 NP_787046 NA NA 0 NA NA NA 5 NA
0 0 0.50 FALSE
218 chr2 202902438 202902757 320
47.40455 15169.455 19696830 19697149 532 4463 2.6135937 0.5362500 0.7631250 0.7468750 8.4081250 5.090136e-01 4.779611e-01 3.970807e+00 0.0004248 TRUE 0.0391021 TRUE FZD7 NM_003507 NP_003498 inside exon inside 3128 inside exon 0 1 1 3'UTR
3850 1724 0.50 FALSE
219 chr15 26789903 26790131 229
66.22928 15166.504 473824 474052 11 4122 0.8495633 0.0000000 0.0131004 0.0000000 3.3851528 1.000000e+100 NaN 1.000000e+100 0.0004251 TRUE 0.0391021 TRUE GABRB3 NM_000814 NM_001191320 NM_001191321 NM_001278631 NM_021912 NP_000805 NP_001178249 NP_001178250 NP_001265560 NP_068712 NR_103801 inside exon inside 394555 inside exon 0 10 10 3'UTR
395992 391643 0.50 FALSE
220 chr1 82456730 82456962 233
64.78509 15094.925 11405513 11405745 322 1848 0.9006438 0.0248927 0.0000000 0.0000000 3.5776824 -1.000000e+100 -1.000000e+100 7.167159e+00 0.0004332 TRUE 0.0396041 TRUE LPHN2 NM_012302 NP_036434 XM_005270666 XM_005270667 XM_005270668 XM_005270670 XM_005270673 XM_005270674 XM_006710485 XM_006710486 XM_006710487 XM_006710488 XM_006710489 XM_006710490 XM_006710491 XM_006710492 XM_006710493 XM_006710494 XM_006710495 XM_006710496 XM_006710497 XP_005270723 XP_005270724 XP_005270725 XP_005270727 XP_005270730 XP_005270731 XP_006710548 XP_006710549 XP_006710550 XP_006710551 XP_006710552 XP_006710553 XP_006710554 XP_006710555 XP_006710556 XP_006710557 XP_006710558 XP_006710559 XP_006710560 inside exon inside 40857 inside exon 0 17 17 overlaps 3'UTR
42234 40867 0.50 FALSE
221 chr3 54668710 54669019 310
48.63176 15075.847 7092821 7093130 171 7351 1.6266129 0.1303226 0.1954839 0.1954839 5.9851613 5.849625e-01 5.849625e-01 5.521231e+00 0.0004363 TRUE 0.0396041 TRUE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.50 FALSE
222 chrX 113704150 113704496 347
43.43679 15072.566 6940951 6941297 299 5443 2.6778098 0.1279539 0.1527378 0.2576369 10.1729107 2.554327e-01 1.009715e+00 6.312965e+00 0.0004364 TRUE 0.0396041 TRUE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 upstream upstream 114055 NA NA NA 6 NA
326073 180632 0.50 FALSE
223 chr2 5841087 5841512 426
35.31585 15044.551 206324 206749 16 8660 0.7922535 0.1422535 0.0807512 0.0000000 2.9460094 -8.169092e-01 -1.000000e+100 4.372226e+00 0.0004390 TRUE 0.0396609 TRUE SOX11 NM_003108 NP_003099 inside exon inside 8288 inside exon 0 1 1 3'UTR
8718 1325 0.50 FALSE
224 chr2 168729265 168729344 80
187.44600 14995.680 16192157 16192236 428 1807 0.4981250 0.0000000 0.0000000 0.0000000 1.9925000 NaN NaN 1.000000e+100 0.0004434 TRUE 0.0398778 TRUE B3GALT1 NM_020981 NP_066191 XM_005246931 XM_006712819 XP_005246988 XP_006712882 downstream downstream 54083 NA NA NA 2 NA
52184 980 0.50 FALSE
225 chr18 6949100 6949258 159
93.96821 14940.945 515514 515672 17 3800 0.6386792 0.0000000 0.0000000 0.0000000 2.5547170 NaN NaN 1.000000e+100 0.0004494 TRUE 0.0402379 TRUE LAMA1 NM_005559 NP_005550 inside exon inside 168555 inside exon 0 58 62 inside transcription region
176070 95663 0.50 FALSE
226 chr8 114523076 114523264 189
78.84354 14901.428 8020886 8021074 290 3097 1.0222222 0.0000000 0.0000000 0.0000000 4.0888889 NaN NaN 1.000000e+100 0.0004544 TRUE 0.0405081 TRUE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 73834 NA NA NA 71 NA
1214083 1212083 0.50 FALSE
227 chr3 57124729 57125025 297
50.10517 14881.234 7279023 7279319 180 8154 0.7171717 0.0000000 0.0000000 0.0000000 2.8686869 NaN NaN 1.000000e+100 0.0004570 TRUE 0.0405600 TRUE IL17RD NM_017563 NP_060033 XM_005265238 XM_006713209 XP_005265295 XP_006713272 inside exon inside 79306 inside exon 0 14 14 3'UTR
80321 13261 0.50 FALSE
228 chr5 2746603 2746840 238
62.36840 14843.680 284218 284455 9 3022 0.4197479 0.0000000 0.0000000 0.0000000 1.6789916 NaN NaN 1.000000e+100 0.0004635 TRUE 0.0407129 TRUE IRX2 NM_001134222 NM_033267 NP_001127694 NP_150366 inside exon inside 4929 inside exon 0 4 4 3'UTR
5490 3849 0.50 FALSE
229 chr3 54671141 54671460 320
46.38042 14841.736 7094812 7095131 171 7351 0.7034375 0.0000000 0.0000000 0.0000000 2.8137500 NaN NaN 1.000000e+100 0.0004637 TRUE 0.0407129 TRUE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.50 FALSE
230 chr14 93401366 93401625 260
57.01624 14824.223 8680022 8680281 253 12111 1.3838462 0.0000000 0.0000000 0.2330769 5.3023077 NaN 1.000000e+100 1.000000e+100 0.0004648 TRUE 0.0407129 TRUE CHGA NM_001275 NP_001266 XM_005267292 XM_006725160 XP_005267349 XP_006725223 inside exon inside 11921 inside exon 0 7 7 3'UTR
12193 11524 0.50 FALSE
231 chr6 114748691 114749092 402
36.71851 14760.840 11099959 11100360 302 5708 0.6201493 0.0000000 0.0000000 0.0000000 2.4805970 NaN NaN 1.000000e+100 0.0004718 TRUE 0.0411450 TRUE HS3ST5 NM_153612 NP_705840 XM_006715379 XP_006715442 upstream upstream 85151 NA NA NA 5 NA
286790 5588 0.50 FALSE
232 chr1 156641850 156642069 220
66.86782 14710.920 19870849 19871068 536 8487 0.6597727 0.2218182 0.0000000 0.0000000 2.4172727 -1.000000e+100 -1.000000e+100 3.445931e+00 0.0004776 TRUE 0.0413528 TRUE NES NM_006617 NP_006608 inside exon inside 5120 inside exon 0 4 4 inside transcription region
8633 7942 0.50 FALSE
233 chr16 78013224 78013548 325
45.24092 14703.299 10469639 10469963 272 2496 1.0130769 0.0000000 0.1046154 0.4178462 3.5298462 1.000000e+100 1.000000e+100 1.000000e+100 0.0004783 TRUE 0.0413528 TRUE VAT1L NM_020927 NP_065978 inside exon inside 190741 inside exon 0 9 9 3'UTR
191518 189012 0.50 FALSE
234 chr12 10487462 10487578 117
125.30742 14660.968 1855010 1855126 56 1469 1.7461538 0.5709402 0.8683761 0.1333333 5.4119658 6.049804e-01 -2.098302e+00 3.244741e+00 0.0004843 TRUE 0.0416856 TRUE KLRD1 NM_001114396 NM_002262 NM_007334 NP_001107868 NP_002253 NP_031360 XM_005253363 XM_006719065 XM_006719066 XM_006719067 XM_006719068 XP_005253420 XP_006719128 XP_006719129 XP_006719130 XP_006719131 downstream downstream 30412 NA NA NA 7 NA
12800 6715 0.50 FALSE
235 chr4 187509716 187509925 210
69.73679 14644.725 12659583 12659792 494 1741 0.6869048 0.0000000 0.0000000 0.0000000 2.7476190 NaN NaN 1.000000e+100 0.0004874 TRUE 0.0416856 TRUE FAT1 NM_005245 NP_005236 XM_005262834 XM_005262835 XM_006714139 XP_005262891 XP_005262892 XP_006714202 inside exon inside 135062 inside exon 0 27 27 overlaps 3'UTR
136050 121235 0.50 FALSE
236 chr11 102103810 102104049 240
60.96828 14632.386 10978011 10978250 335 3102 1.3406250 0.4650000 0.0108333 0.4150000 4.4716667 -5.423682e+00 -1.641194e-01 3.265510e+00 0.0004883 TRUE 0.0416856 TRUE YAP1 NM_001130145 NM_001195044 NM_001195045 NM_001282097 NM_001282098 NM_001282099 NM_001282100 NM_001282101 NM_006106 NP_001123617 NP_001181973 NP_001181974 NP_001269026 NP_001269027 NP_001269028 NP_001269029 NP_001269030 NP_006097 XM_005271378 XM_005271380 XM_005271381 XM_005271383 XP_005271435 XP_005271437 XP_005271438 XP_005271440 inside exon inside 47061 inside exon 0 6 6 3'UTR
47405 43893 0.50 FALSE
237 chr8 129626267 129626390 124
117.11467 14522.219 9527392 9527515 315 862 0.7423387 0.0000000 0.1629032 0.0000000 2.8064516 1.000000e+100 NaN 1.000000e+100 0.0005021 TRUE 0.0425161 TRUE MIR1208 NR_031613 NA NA 0 NA NA NA 1 NA
0 0 0.51 FALSE
238 chr13 100616722 100616918 197
73.71076 14521.021 5448440 5448636 191 2995 0.5101523 0.0000000 0.0000000 0.0000000 2.0406091 NaN NaN 1.000000e+100 0.0005023 TRUE 0.0425161 TRUE ZIC5 NM_033132 NP_149123 inside exon inside 7260 inside exon 0 2 2 3'UTR
8903 6298 0.51 FALSE
239 chr10 53799041 53799318 278
52.06027 14472.754 5592092 5592369 138 5761 0.7820144 0.0726619 0.0726619 0.0000000 2.9827338 0.000000e+00 -1.000000e+100 5.359293e+00 0.0005081 TRUE 0.0428305 TRUE PRKG1 NM_001098512 NM_006258 NP_001091982 NP_006249 XM_005269970 XM_005269971 XM_005269972 XP_005270027 XP_005270028 XP_005270029 inside intron inside 964807 inside intron 14926 6 18 inside transcription region
1223876 1219309 0.51 FALSE
240 chr12 53295648 53295856 209
69.05098 14431.655 6338020 6338228 154 7844 3.4677033 0.9416268 1.8727273 0.4813397 10.5751196 9.919135e-01 -9.680999e-01 3.489375e+00 0.0005145 TRUE 0.0431830 TRUE KRT8 NM_001256282 NM_001256293 NM_002273 NP_001243211 NP_001243222 NP_002264 NR_045962 inside exon inside 47794 inside exon 0 3 9 inside transcription region
52679 7553 0.51 FALSE
241 chr12 8948206 8948383 178
80.96385 14411.565 1368060 1368237 52 8328 1.0963483 0.0000000 0.0000000 0.0000000 4.3853933 NaN NaN 1.000000e+100 0.0005175 TRUE 0.0432615 TRUE RIMKLB NM_020734 NP_065785 XM_006719116 XM_006719117 XM_006719118 XM_006719119 XM_006719120 XM_006719121 XM_006719122 XM_006719123 XM_006719124 XM_006719125 XM_006719126 XM_006719127 XM_006719128 XP_006719179 XP_006719180 XP_006719181 XP_006719182 XP_006719183 XP_006719184 XP_006719185 XP_006719186 XP_006719187 XP_006719188 XP_006719189 XP_006719190 XP_006719191 NA NA 0 NA NA NA 9 NA
0 0 0.51 FALSE
242 chr8 41122804 41123008 205
70.20977 14393.003 3333326 3333530 129 3517 1.0956098 0.0000000 0.0000000 0.0000000 4.3824390 NaN NaN 1.000000e+100 0.0005198 TRUE 0.0432718 TRUE SFRP1 NM_003012 NP_003003 inside exon inside 43982 inside exon 0 3 3 inside transcription region
47514 43992 0.51 FALSE
243 chrX 5808744 5809081 338
42.51242 14369.196 648510 648847 19 2072 0.6162722 0.0508876 0.1502959 0.0597633 2.2041420 1.562420e+00 2.319467e-01 5.436760e+00 0.0005224 TRUE 0.0433089 TRUE NLGN4X NM_001282145 NM_001282146 NM_020742 NM_181332 NP_001269074 NP_001269075 NP_065793 NP_851849 XM_005274564 XM_005274565 XM_005274566 XM_005274568 XM_006724504 XP_005274621 XP_005274622 XP_005274623 XP_005274625 XP_006724567 inside exon inside 337625 inside exon 0 7 7 3'UTR
338623 258649 0.51 FALSE
244 chr5 141693647 141693806 160
89.11364 14258.183 12326074 12326233 384 14439 0.6993750 0.0000000 0.0000000 0.0000000 2.7975000 NaN NaN 1.000000e+100 0.0005390 TRUE 0.0444974 TRUE SPRY4 NM_001127496 NM_030964 NP_001120968 NP_112226 XM_005268518 XM_005268519 XM_006714798 XP_005268575 XP_005268576 XP_006714861 inside exon inside 10814 inside exon 0 3 3 overlaps 3'UTR
14628 5556 0.51 FALSE
245 chr6 121756811 121756978 168
84.62158 14216.426 11635099 11635266 324 168 2.4556548 0.6083333 0.0000000 0.0000000 9.2142857 -1.000000e+100 -1.000000e+100 3.920938e+00 0.0005443 TRUE 0.0447560 TRUE GJA1 NM_000165 NP_000156 inside exon inside 66 inside exon 0 1 2 5' UTR
14128 1148 0.51 FALSE
246 chr6 114747247 114747401 155
91.47193 14178.149 11098656 11098810 302 5708 1.3129032 0.0000000 0.0000000 0.0000000 5.2516129 NaN NaN 1.000000e+100 0.0005505 TRUE 0.0450788 TRUE HS3ST5 NM_153612 NP_705840 XM_006715379 XP_006715442 upstream upstream 83707 NA NA NA 5 NA
286790 5588 0.51 FALSE
247 chr3 109045220 109045656 437
32.27994 14106.336 10141701 10142137 311 11345 8.0924485 3.5208238 2.8970252 4.0878719 21.8640732 -2.813408e-01 2.154369e-01 2.634577e+00 0.0005615 TRUE 0.0452911 TRUE DPPA4 NM_018189 NP_060659 inside exon inside 10763 inside exon 0 6 6 3'UTR
11431 8594 0.51 FALSE
248 chr1 156642819 156642997 179
78.76910 14099.669 19871632 19871810 536 8487 0.6022346 0.3318436 0.0000000 0.0000000 2.0770950 -1.000000e+100 -1.000000e+100 2.645992e+00 0.0005623 TRUE 0.0452911 TRUE NES NM_006617 NP_006608 inside exon inside 4192 inside exon 0 4 4 inside transcription region
8633 7942 0.51 FALSE
249 chr3 54667941 54668161 221
63.76629 14092.350 7092251 7092471 171 7351 0.6542986 0.0000000 0.0000000 0.0000000 2.6171946 NaN NaN 1.000000e+100 0.0005633 TRUE 0.0452911 TRUE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.51 FALSE
250 chr17 47133250 47133444 195
72.23499 14085.823 9737675 9737869 231 18864 1.2092308 0.0000000 0.0000000 0.0000000 4.8369231 NaN NaN 1.000000e+100 0.0005644 TRUE 0.0452911 TRUE IGF2BP1 NM_001160423 NM_006546 NP_001153895 NP_006537 XM_005256955 XP_005257012 inside exon inside 58476 inside exon 0 13 13 3'UTR
58733 51698 0.51 FALSE
251 chr2 67566158 67566385 228
61.69828 14067.208 7344777 7345004 170 8050 0.5574561 0.0000000 0.0000000 0.0000000 2.2298246 NaN NaN 1.000000e+100 0.0005675 TRUE 0.0452911 TRUE ETAA1 NM_019002 NP_061875 XM_005264374 XM_005264375 XM_005264376 XM_005264377 XM_005264378 XP_005264431 XP_005264432 XP_005264433 XP_005264434 XP_005264435 upstream upstream 58057 NA NA NA 6 NA
13091 12589 0.51 FALSE
252 chr1 55529702 55529973 272
51.70488 14063.727 9839389 9839660 252 890 0.8104779 0.0000000 0.0000000 0.0000000 3.2419118 NaN NaN 1.000000e+100 0.0005685 TRUE 0.0452911 TRUE PCSK9 NM_174936 NP_777596 NR_110451 NA NA 0 NA NA NA 10 NA
0 0 0.51 FALSE
253 chr14 74825178 74825332 155
90.70896 14059.890 6617239 6617393 201 3221 0.8516129 0.0000000 0.0000000 0.0000000 3.4064516 NaN NaN 1.000000e+100 0.0005688 TRUE 0.0452911 TRUE VRTN NM_018228 NP_060698 inside exon inside 10012 inside exon 0 2 2 inside transcription region
11545 2108 0.51 FALSE
254 chr12 8940747 8940924 178
78.74957 14017.424 1366451 1366628 52 8328 1.1064607 0.0000000 0.0000000 0.0000000 4.4258427 NaN NaN 1.000000e+100 0.0005776 TRUE 0.0458075 TRUE RIMKLB NM_020734 NP_065785 XM_006719116 XM_006719117 XM_006719118 XM_006719119 XM_006719120 XM_006719121 XM_006719122 XM_006719123 XM_006719124 XM_006719125 XM_006719126 XM_006719127 XM_006719128 XP_006719179 XP_006719180 XP_006719181 XP_006719182 XP_006719183 XP_006719184 XP_006719185 XP_006719186 XP_006719187 XP_006719188 XP_006719189 XP_006719190 XP_006719191 NA NA 0 NA NA NA 9 NA
0 0 0.51 FALSE
255 chr15 65623772 65623997 226
61.89960 13989.310 5965710 5965935 184 8664 0.5117257 0.0000000 0.0000000 0.0000000 2.0469027 NaN NaN 1.000000e+100 0.0005855 TRUE 0.0462558 TRUE IGDCC3 NM_004884 NP_004875 inside exon inside 24713 inside exon 0 7 12 inside transcription region
26982 6564 0.51 FALSE
256 chr4 93523391 93523525 135
103.47669 13969.354 7118237 7118371 252 3836 0.6340741 0.0000000 0.0000000 0.0000000 2.5362963 NaN NaN 1.000000e+100 0.0005883 TRUE 0.0462646 TRUE GRID2 NM_001286838 NM_001510 NP_001273767 NP_001501 XM_006714195 XP_006714258 inside intron inside 297841 inside intron -11954 2 15 inside transcription region
1468099 1467841 0.51 FALSE
257 chr7 136935977 136936138 162
86.18204 13961.491 13939968 13940129 385 3745 2.4040123 0.6160494 0.4370370 0.0000000 8.5629630 -4.952905e-01 -1.000000e+100 3.796992e+00 0.0005902 TRUE 0.0462646 TRUE PTN NM_002825 NP_002816 XM_005250515 XM_005250516 XP_005250572 XP_005250573 inside exon inside 92408 inside exon 0 4 5 inside transcription region
116454 26953 0.51 FALSE
258 chr7 83090259 83090482 224
62.18237 13928.851 8279763 8279986 218 5588 0.5520089 0.0000000 0.0000000 0.0000000 2.2080357 NaN NaN 1.000000e+100 0.0005964 TRUE 0.0465666 TRUE SEMA3E NM_001178129 NM_012431 NP_001171600 NP_036563 XM_006716187 XP_006716250 inside intron inside 187997 inside intron -5316 4 17 inside transcription region
285257 280956 0.51 FALSE
259 chr15 77907148 77907321 174
79.92182 13906.396 7909674 7909847 231 2856 0.6491379 0.0000000 0.0000000 0.0000000 2.5965517 NaN NaN 1.000000e+100 0.0005998 TRUE 0.0466073 TRUE LINGO1 NM_032808 NP_116197 XM_006720723 XP_006720786 inside exon inside 81154 inside exon 0 4 4 inside transcription region
83106 1844 0.51 FALSE
260 chr13 100616157 100616400 244
56.89263 13881.801 5448092 5448335 191 2995 0.5706967 0.0000000 0.0000000 0.0000000 2.2827869 NaN NaN 1.000000e+100 0.0006035 TRUE 0.0466073 TRUE ZIC5 NM_033132 NP_149123 inside exon inside 7778 inside exon 0 2 2 3'UTR
8903 6298 0.51 FALSE
261 chr5 146773235 146773515 281
49.39740 13880.670 12807921 12808201 394 10875 1.6119217 0.8946619 0.3765125 0.2042705 4.9722420 -1.248645e+00 -2.130862e+00 2.474482e+00 0.0006038 TRUE 0.0466073 TRUE DPYSL3 NM_001197294 NM_001387 NP_001184223 NP_001378 inside exon inside 116104 inside exon 0 14 14 3'UTR
119248 115823 0.51 FALSE
262 chr5 115781504 115781860 357
38.64011 13794.520 9459227 9459583 285 3139 1.7344538 0.0100840 0.1854342 0.1210084 6.6212885 4.200762e+00 3.584963e+00 9.358895e+00 0.0006180 TRUE 0.0475012 TRUE SEMA6A NM_020796 NP_065847 XM_005272041 XM_005272042 XM_006714663 XP_005272098 XP_005272099 XP_006714726 inside exon inside 128691 inside exon 0 19 19 3'UTR
131300 58331 0.51 FALSE
263 chr17 42876603 42876832 230
59.86767 13769.564 8247212 8247441 204 7091 0.7058696 0.0000000 0.0000000 0.0000000 2.8234783 NaN NaN 1.000000e+100 0.0006223 TRUE 0.0475012 TRUE GJC1 NM_001080383 NM_005497 NP_001073852 NP_005488 XM_005256920 XM_005256921 XP_005256977 XP_005256978 inside exon inside 31347 inside exon 0 3 3 3'UTR
32363 1190 0.51 FALSE
264 chr18 2847017 2847199 183
75.23921 13768.776 268805 268987 7 183 13.0281421 47.3650273 1.2699454 3.0732240 0.4043716 -5.220984e+00 -3.945997e+00 -6.871997e+00 0.0006225 TRUE 0.0475012 TRUE EMILIN2 NM_032048 NP_114437 overlaps 5' overlaps 5' 0 inside exon 0 1 8 overlaps 5' UTR
67062 66215 0.51 FALSE
265 chrX 113705687 113705910 224
61.33788 13739.686 6942206 6942429 299 5443 1.0026786 0.0607143 0.0133929 0.0285714 3.9080357 -2.180572e+00 -1.087463e+00 6.008264e+00 0.0006274 TRUE 0.0476919 TRUE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 upstream upstream 112641 NA NA NA 6 NA
326073 180632 0.51 FALSE
266 chr7 121659184 121659322 139
98.75317 13726.691 12249031 12249169 331 145 0.7546763 0.0000000 0.0000000 0.0000000 3.0187050 NaN NaN 1.000000e+100 0.0006301 TRUE 0.0477214 TRUE PTPRZ1 NM_001206838 NM_001206839 NM_002851 NP_001193767 NP_001193768 NP_002842 XM_005250519 XM_006716076 XP_005250576 XP_006716139 inside exon inside 146025 inside exon 0 13 30 inside transcription region
188931 187720 0.51 FALSE
267 chr16 65266048 65266237 190
72.16268 13710.909 8196507 8196696 214 5478 0.6100000 0.0000000 0.0000000 0.0000000 2.4400000 NaN NaN 1.000000e+100 0.0006327 TRUE 0.0477385 TRUE LINC00922 NM_001101346 NR_027755 NA NA 0 NA NA NA 6 NA
0 0 0.51 FALSE
268 chr5 141692507 141692741 235
57.99894 13629.750 12325645 12325879 384 14439 0.6455319 0.0000000 0.0000000 0.0595745 2.5225532 NaN 1.000000e+100 1.000000e+100 0.0006457 TRUE 0.0485358 TRUE SPRY4 NM_001127496 NM_030964 NP_001120968 NP_112226 XM_005268518 XM_005268519 XM_006714798 XP_005268575 XP_005268576 XP_006714861 inside exon inside 11879 inside exon 0 3 3 3'UTR
14628 5556 0.51 FALSE
269 chr2 77325596 77325801 206
66.01103 13598.272 8970769 8970974 213 11162 0.7592233 0.0000000 0.0000000 0.0000000 3.0368932 NaN NaN 1.000000e+100 0.0006517 TRUE 0.0487089 TRUE LRRTM4 NM_001134745 NM_001282924 NM_001282928 NM_024993 NP_001128217 NP_001269853 NP_001269857 NP_079269 inside intron inside 423701 inside intron 349554 4 4 inside transcription region
774652 772976 0.51 FALSE
270 chr21 44475285 44475414 130
104.54845 13591.298 2430269 2430398 56 13860 0.5288462 0.0000000 0.1230769 0.0000000 1.9923077 1.000000e+100 NaN 1.000000e+100 0.0006528 TRUE 0.0487089 TRUE CBS NM_000071 NM_001178008 NM_001178009 NP_000062 NP_001171479 NP_001171480 XM_006724057 XP_006724120 inside intron inside 21058 inside intron 1192 17 18 inside transcription region
23171 18313 0.51 FALSE
271 chr1 232272252 232272435 184
73.71276 13563.148 27624464 27624647 784 3355 0.5459239 0.0173913 0.0000000 0.0000000 2.1663043 -1.000000e+100 -1.000000e+100 6.960726e+00 0.0006569 TRUE 0.0488192 TRUE TSNAX-DISC1 NR_028393 NR_028394 NR_028395 NR_028396 NR_028397 NR_028398 NR_028399 NR_028400 NA NA 0 NA NA NA 16 NA
0 0 0.51 FALSE
272 chr1 156641604 156641829 226
59.96115 13551.220 19870623 19870848 536 8487 0.9982301 0.2159292 0.0000000 0.0000000 3.7769912 -1.000000e+100 -1.000000e+100 4.128607e+00 0.0006592 TRUE 0.0488192 TRUE NES NM_006617 NP_006608 inside exon inside 5360 inside exon 0 4 4 inside transcription region
8633 7942 0.51 FALSE
273 chr7 121693964 121694092 129
104.69905 13506.178 12250479 12250607 333 3660 1.2941860 0.0000000 0.0000000 0.0000000 5.1767442 NaN NaN 1.000000e+100 0.0006647 TRUE 0.0490474 TRUE PTPRZ1 NM_001206838 NM_001206839 NM_002851 NP_001193767 NP_001193768 NP_002842 XM_005250519 XM_006716076 XP_005250576 XP_006716139 inside exon inside 180805 inside exon 0 26 30 inside transcription region
188931 187720 0.52 FALSE
274 chr20 57415778 57415936 159
84.60402 13452.039 6588175 6588333 175 734 0.8745283 0.0000000 0.0000000 0.0000000 3.4981132 NaN NaN 1.000000e+100 0.0006752 TRUE 0.0496436 TRUE GNAS NM_000516 NM_001077488 NM_001077489 NM_001077490 NM_016592 NM_080425 NM_080426 NP_000507 NP_001070956 NP_001070957 NP_001070958 NP_057676 NP_536350 NP_536351 NR_003259 XM_005260401 XM_005260402 XM_006723781 XM_006723782 XP_005260458 XP_005260459 XP_006723844 XP_006723845 inside exon inside 983 inside exon 0 1 13 overlaps 3'UTR
71455 737 0.52 FALSE
275 chr12 8946903 8947094 192
69.96853 13433.958 1367082 1367273 52 8328 0.9208333 0.0000000 0.0000000 0.0000000 3.6833333 NaN NaN 1.000000e+100 0.0006793 TRUE 0.0497602 TRUE RIMKLB NM_020734 NP_065785 XM_006719116 XM_006719117 XM_006719118 XM_006719119 XM_006719120 XM_006719121 XM_006719122 XM_006719123 XM_006719124 XM_006719125 XM_006719126 XM_006719127 XM_006719128 XP_006719179 XP_006719180 XP_006719181 XP_006719182 XP_006719183 XP_006719184 XP_006719185 XP_006719186 XP_006719187 XP_006719188 XP_006719189 XP_006719190 XP_006719191 NA NA 0 NA NA NA 9 NA
0 0 0.52 FALSE
276 chr11 67393572 67393820 249
53.87062 13413.784 7449359 7449607 230 770 1.5281124 0.0947791 0.5429719 0.6032129 4.8714859 2.518236e+00 2.670026e+00 5.683649e+00 0.0006820 TRUE 0.0497812 TRUE NUDT8 NM_001243750 NM_181843 NP_001230679 NP_862826 downstream downstream 3588 NA NA NA 3 NA
1999 1606 0.52 FALSE
277 chr19 54446502 54446666 165
80.96374 13359.017 11721726 11721890 396 1943 1.2087879 0.0000000 0.0000000 0.0000000 4.8351515 NaN NaN 1.000000e+100 0.0006939 TRUE 0.0504626 TRUE CACNG7 NM_031896 NP_114102 XM_005259124 XM_005259125 XP_005259181 XP_005259182 inside exon inside 30511 inside exon 0 5 5 3'UTR
30978 29461 0.52 FALSE
278 chr12 86268093 86268254 162
81.84097 13258.237 9619324 9619485 270 4255 0.8382716 0.0382716 0.0864198 0.0000000 3.2283951 1.175087e+00 -1.000000e+100 6.398399e+00 0.0007161 TRUE 0.0518915 TRUE NTS NM_006183 NP_006174 inside exon inside 20 inside exon 0 1 4 overlaps 5' UTR
8697 7971 0.52 FALSE
279 chr7 121652529 121652701 173
75.87908 13127.080 12248238 12248410 330 3506 0.6904624 0.0000000 0.0000000 0.0000000 2.7618497 NaN NaN 1.000000e+100 0.0007425 TRUE 0.0536147 TRUE PTPRZ1 NM_001206838 NM_001206839 NM_002851 NP_001193767 NP_001193768 NP_002842 XM_005250519 XM_006716076 XP_005250576 XP_006716139 inside intron inside 139370 inside intron -1166 12 30 inside transcription region
188931 187720 0.52 FALSE
280 chr4 180090389 180090809 421
31.04512 13069.995 12309683 12310103 468 3689 0.4768409 0.0000000 0.0000000 0.0000000 1.9073634 NaN NaN 1.000000e+100 0.0007552 TRUE 0.0543335 TRUE LINC01098 NM_001085490 NR_028342 NA NA 0 NA NA NA 6 NA
0 0 0.52 FALSE
281 chr12 59717346 59717508 163
79.97842 13036.483 7619580 7619742 197 6694 1.9490798 0.0000000 0.0110429 0.0196319 7.7656442 1.000000e+100 1.000000e+100 1.000000e+100 0.0007620 TRUE 0.0546286 TRUE SLC16A7 NM_001270622 NM_001270623 NM_004731 NP_001257551 NP_001257552 NP_004722 NR_073055 NR_073056 XM_005269231 XM_006719693 XP_005269288 XP_006719756 upstream upstream 272313 NA NA NA 6 NA
193814 74877 0.52 FALSE
282 chr18 6948402 6948555 154
84.40969 12999.092 515360 515513 17 3800 0.8188312 0.0000000 0.0000000 0.0000000 3.2753247 NaN NaN 1.000000e+100 0.0007700 TRUE 0.0550027 TRUE LAMA1 NM_005559 NP_005550 inside exon inside 169258 inside exon 0 59 62 inside transcription region
176070 95663 0.52 FALSE
283 chr13 56154834 56155008 175
73.84728 12923.274 3926105 3926279 121 13379 1.0980000 0.0000000 0.0000000 0.0000000 4.3920000 NaN NaN 1.000000e+100 0.0007865 TRUE 0.0559862 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.52 FALSE
284 chr13 51748705 51748920 216
59.62432 12878.853 3598442 3598657 92 10662 10.1291667 0.0787037 0.5648148 0.7305556 39.1425926 2.843275e+00 3.214491e+00 8.958092e+00 0.0007969 TRUE 0.0563386 TRUE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.53 FALSE
285 chr12 66359712 66359973 262
49.14917 12877.081 8152394 8152655 215 2964 1.0416031 0.0000000 0.0000000 0.2931298 3.8732824 NaN 1.000000e+100 1.000000e+100 0.0007970 TRUE 0.0563386 TRUE HMGA2 NM_001015886 NM_003483 NM_003484 NP_003474 NP_003475 XM_005269164 XM_006719620 XP_005269221 XP_006719683 XR_245958 inside exon inside 141472 inside exon 0 5 5 3'UTR
141831 138021 0.53 FALSE
286 chr2 17773337 17773503 167
76.94006 12848.989 1048534 1048700 41 167 0.7565868 0.0000000 0.0000000 0.0000000 3.0263473 NaN NaN 1.000000e+100 0.0008042 TRUE 0.0566443 TRUE VSNL1 NM_003385 NP_003376 inside exon inside 51530 inside exon 0 2 4 overlaps 5' UTR
115899 63319 0.53 FALSE
287 chr12 14859136 14859397 262
48.54584 12719.009 2666269 2666530 70 3841 1.0646947 0.0000000 0.1595420 0.1541985 3.9450382 1.000000e+100 1.000000e+100 1.000000e+100 0.0008371 TRUE 0.0587584 TRUE GUCY2C NM_004963 NP_004954 upstream upstream 9617 NA NA NA 27 NA
83951 83331 0.53 FALSE
288 chr4 189012451 189012600 150
84.61877 12692.815 12667880 12668029 498 639 0.5713333 0.0000000 0.0000000 0.0000000 2.2853333 NaN NaN 1.000000e+100 0.0008444 TRUE 0.0590649 TRUE TRIML2 NM_173553 NP_775824 XM_006714136 XP_006714199 inside exon inside 14144 inside exon 0 8 8 overlaps 3'UTR
14317 13995 0.53 FALSE
289 chr13 43441277 43441413 137
92.53736 12677.619 2381221 2381357 57 13438 0.7704380 0.0000000 0.0000000 0.0000000 3.0817518 NaN NaN 1.000000e+100 0.0008480 TRUE 0.0591093 TRUE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 124994 NA NA NA 13 NA
105883 103915 0.53 FALSE
290 chr13 53313765 53313952 188
67.18674 12631.108 3909431 3909618 108 787 0.7973404 0.0000000 0.0000000 0.0000000 3.1893617 NaN NaN 1.000000e+100 0.0008601 TRUE 0.0597506 TRUE LECT1 NM_001011705 NM_007015 NP_001011705 NP_008946 XM_006719760 XM_006719761 XP_006719823 XP_006719824 overlaps 5' overlaps 5' 0 inside exon 0 1 6 overlaps 5' UTR
36547 36187 0.53 FALSE
291 chr13 51748306 51748477 172
73.15402 12582.492 3598043 3598214 92 10662 5.5014535 0.1941860 0.0000000 0.0000000 21.8116279 -1.000000e+100 -1.000000e+100 6.811514e+00 0.0008723 TRUE 0.0599786 TRUE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.53 FALSE
292 chr1 156043299 156043390 92
136.61987 12569.028 19697588 19697679 529 5488 0.7407609 0.0000000 0.1956522 0.0000000 2.7673913 1.000000e+100 NaN 1.000000e+100 0.0008756 TRUE 0.0599786 TRUE MEX3A NM_001093725 NP_001087194 inside exon inside 8399 inside exon 0 2 2 3'UTR
9985 5424 0.53 FALSE
293 chr13 43439099 43439345 247
50.88533 12568.675 2379368 2379614 57 13438 0.6722672 0.0000000 0.1894737 0.0000000 2.4995951 1.000000e+100 NaN 1.000000e+100 0.0008759 TRUE 0.0599786 TRUE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 127062 NA NA NA 13 NA
105883 103915 0.53 FALSE
294 chrX 113704580 113704803 224
56.10468 12567.448 6941381 6941604 299 5443 1.6988839 0.1821429 0.0660714 0.6616071 5.8857143 -1.462972e+00 1.860904e+00 5.014075e+00 0.0008765 TRUE 0.0599786 TRUE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 upstream upstream 113748 NA NA NA 6 NA
326073 180632 0.53 FALSE
295 chr7 121678809 121678943 135
93.04038 12560.451 12249609 12249743 332 16420 0.7018519 0.0000000 0.0000000 0.0000000 2.8074074 NaN NaN 1.000000e+100 0.0008783 TRUE 0.0599786 TRUE PTPRZ1 NM_001206838 NM_001206839 NM_002851 NP_001193767 NP_001193768 NP_002842 XM_005250519 XM_006716076 XP_005250576 XP_006716139 inside exon inside 165650 inside exon 0 19 30 inside transcription region
188931 187720 0.53 FALSE
296 chr9 133995622 133995908 287
43.70841 12544.314 11058938 11059224 391 5341 0.9729965 0.0571429 0.2850174 0.2738676 3.2759582 2.318405e+00 2.260833e+00 5.841200e+00 0.0008824 TRUE 0.0600519 TRUE AIF1L NM_001002260 NM_001185095 NM_001185096 NM_031426 NP_001172024 NP_001172025 NP_113614 NR_033701 inside exon inside 17432 inside exon 0 5 5 overlaps 3'UTR
20349 17441 0.53 FALSE
297 chr1 229313094 229313237 144
86.83781 12504.644 27202907 27203050 774 5305 1.5163194 0.1402778 0.5625000 0.0833333 5.2791667 2.003567e+00 -7.513209e-01 5.233952e+00 0.0008911 TRUE 0.0604439 TRUE RAB4A NM_001271998 NM_004578 NP_001258927 NP_004569 NR_073545 upstream upstream 93572 NA NA NA 8 NA
34831 31637 0.53 FALSE
298 chr13 47407393 47407432 40
311.97601 12479.040 2833102 2833141 68 85 0.4700000 0.0000000 0.0000000 0.0000000 1.8800000 NaN NaN 1.000000e+100 0.0008976 TRUE 0.0606797 TRUE HTR2A NM_000621 NM_001165947 NP_000612 NP_001159419 inside exon inside 63779 inside exon 0 4 4 3'UTR
65534 61069 0.53 FALSE
299 chr6 3227721 3227876 156
79.67205 12428.840 465942 466097 12 3330 5.6817308 0.0000000 0.0000000 0.0000000 22.7269231 NaN NaN 1.000000e+100 0.0009108 TRUE 0.0613620 TRUE TUBB2B NM_178012 NP_821080 inside exon inside 92 inside exon 0 1 4 overlaps 5' UTR
3473 2792 0.53 FALSE
300 chr12 86276001 86276213 213
58.04080 12362.691 9619773 9619985 271 239 0.8685446 0.0000000 0.0000000 0.0000000 3.4741784 NaN NaN 1.000000e+100 0.0009299 TRUE 0.0622679 TRUE NTS NM_006183 NP_006174 inside exon inside 7928 inside exon 0 4 4 overlaps 3'UTR
8697 7971 0.53 FALSE
301 chr20 31375036 31375257 222
55.67403 12359.635 2805961 2806182 85 24597 2.8112613 1.1279279 1.4270270 0.5702703 8.1198198 3.393378e-01 -9.839572e-01 2.847773e+00 0.0009304 TRUE 0.0622679 TRUE DNMT3B NM_001207055 NM_001207056 NM_006892 NM_175848 NM_175849 NM_175850 NP_001193984 NP_001193985 NP_008823 NP_787044 NP_787045 NP_787046 inside exon inside 7378 inside exon 0 6 22 inside transcription region
29504 27787 0.53 FALSE
302 chr9 133996141 133996443 303
40.62145 12308.298 11059455 11059757 391 5341 0.9429043 0.1689769 0.0000000 0.0000000 3.6026403 -1.000000e+100 -1.000000e+100 4.414157e+00 0.0009448 TRUE 0.0630248 TRUE AIF1L NM_001002260 NM_001185095 NM_001185096 NM_031426 NP_001172024 NP_001172025 NP_113614 NR_033701 inside exon inside 17951 inside exon 0 5 5 3'UTR
20349 17441 0.53 FALSE
303 chr12 53292463 53292683 221
55.59369 12286.206 6337351 6337571 154 7844 4.1730769 1.3312217 1.0687783 0.5221719 13.7701357 -3.167883e-01 -1.350154e+00 3.370720e+00 0.0009499 TRUE 0.0630724 TRUE KRT8 NM_001256282 NM_001256293 NM_002273 NP_001243211 NP_001243222 NP_002264 NR_045962 inside exon inside 50967 inside exon 0 7 9 inside transcription region
52679 7553 0.53 FALSE
304 chr5 146772928 146773166 239
51.36963 12277.341 12807614 12807852 394 10875 2.1290795 0.6928870 0.0000000 0.0000000 7.8234310 -1.000000e+100 -1.000000e+100 3.497109e+00 0.0009518 TRUE 0.0630724 TRUE DPYSL3 NM_001197294 NM_001387 NP_001184223 NP_001378 inside exon inside 116453 inside exon 0 14 14 3'UTR
119248 115823 0.53 FALSE
305 chr3 46620722 46620856 135
90.79084 12256.763 5013611 5013745 116 4837 1.3688889 0.0000000 0.0000000 0.0000000 5.4755556 NaN NaN 1.000000e+100 0.0009596 TRUE 0.0633799 TRUE LRRC2 NM_024512 NM_024750 NP_078788 XM_006713332 XP_006713395 inside intron inside 716 inside intron -571 1 9 5' UTR
64694 32577 0.53 FALSE
306 chr15 43991172 43991384 213
57.39620 12225.391 2727870 2728082 83 5230 1.9591549 0.2957746 0.1464789 0.3286385 7.0657277 -1.013806e+00 1.520031e-01 4.578268e+00 0.0009690 TRUE 0.0635843 TRUE CKMT1A NM_001015001 NP_001015001 XM_005254498 XP_005254555 inside exon inside 6088 inside exon 0 10 10 overlaps 3'UTR
6336 5038 0.53 FALSE
307 chr2 202898668 202898867 200
61.12662 12225.324 19693710 19693909 532 4463 0.7702500 0.4080000 0.0000000 0.2020000 2.4710000 -1.000000e+100 -1.014214e+00 2.598454e+00 0.0009690 TRUE 0.0635843 TRUE FZD7 NM_003507 NP_003498 promoter promoter 443 NA NA NA 1 NA
3850 1724 0.53 FALSE
308 chr1 82457605 82457805 201
60.67160 12194.992 11406029 11406229 322 1848 0.4477612 0.0000000 0.0000000 0.0000000 1.7910448 NaN NaN 1.000000e+100 0.0009779 TRUE 0.0639614 TRUE LPHN2 NM_012302 NP_036434 XM_005270666 XM_005270667 XM_005270668 XM_005270670 XM_005270673 XM_005270674 XM_006710485 XM_006710486 XM_006710487 XM_006710488 XM_006710489 XM_006710490 XM_006710491 XM_006710492 XM_006710493 XM_006710494 XM_006710495 XM_006710496 XM_006710497 XP_005270723 XP_005270724 XP_005270725 XP_005270727 XP_005270730 XP_005270731 XP_006710548 XP_006710549 XP_006710550 XP_006710551 XP_006710552 XP_006710553 XP_006710554 XP_006710555 XP_006710556 XP_006710557 XP_006710558 XP_006710559 XP_006710560 inside exon inside 41732 inside exon 0 17 17 3'UTR
42234 40867 0.53 FALSE
309 chr11 3431771 3432069 299
40.68563 12165.004 719880 720178 13 10349 0.8443144 0.0000000 0.0000000 0.0000000 3.3772575 NaN NaN 1.000000e+100 0.0009864 TRUE 0.0640359 TRUE LOC650368 NR_024248 NA NA 0 NA NA NA 9 NA
0 0 0.53 FALSE
310 chr5 120035002 120035145 144
84.42559 12157.285 9720549 9720692 300 4047 1.0361111 0.0000000 0.0000000 0.0000000 4.1444444 NaN NaN 1.000000e+100 0.0009889 TRUE 0.0640359 TRUE PRR16 NM_016644 NP_057728 XM_005272010 XM_005272011 XM_005272012 XP_005272067 XP_005272068 XP_005272069 downstream downstream 234983 NA NA NA 3 NA
222945 205505 0.53 FALSE
311 chr13 43445854 43446020 167
72.73330 12146.461 2384811 2384977 57 13438 0.7407186 0.0000000 0.0000000 0.0000000 2.9628743 NaN NaN 1.000000e+100 0.0009920 TRUE 0.0640359 TRUE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 120387 NA NA NA 13 NA
105883 103915 0.53 FALSE
312 chr5 25432487 25432739 253
48.00623 12145.576 1096404 1096656 57 15439 0.3626482 0.0000000 0.0000000 0.0000000 1.4505929 NaN NaN 1.000000e+100 0.0009924 TRUE 0.0640359 TRUE RP11-730N24.1 NR_037896 NA NA 0 NA NA NA 3 NA
0 0 0.53 FALSE
313 chr1 223197782 223197919 138
87.95062 12137.185 26366505 26366642 754 8216 4.5677536 0.0000000 0.0000000 0.0000000 18.2710145 NaN NaN 1.000000e+100 0.0009949 TRUE 0.0640359 TRUE DISP1 NM_032890 NP_116279 XM_005273335 XM_005273336 XM_006711592 XM_006711593 XM_006711594 XM_006711595 XP_005273392 XP_005273393 XP_006711655 XP_006711656 XP_006711657 XP_006711658 downstream downstream 209351 NA NA NA 10 NA
190906 63148 0.53 FALSE
314 chr1 223202909 223203124 216
56.02248 12100.856 26370672 26370887 754 8216 0.6960648 0.0000000 0.1777778 0.0000000 2.6064815 1.000000e+100 NaN 1.000000e+100 0.0010052 TRUE 0.0644876 TRUE DISP1 NM_032890 NP_116279 XM_005273335 XM_005273336 XM_006711592 XM_006711593 XM_006711594 XM_006711595 XP_005273392 XP_005273393 XP_006711655 XP_006711656 XP_006711657 XP_006711658 downstream downstream 214478 NA NA NA 10 NA
190906 63148 0.53 FALSE
315 chr2 241700646 241700780 135
89.34649 12061.777 23645970 23646104 637 15221 0.7051852 0.0000000 0.0000000 0.0000000 2.8207407 NaN NaN 1.000000e+100 0.0010154 TRUE 0.0649365 TRUE KIF1A NM_001244008 NM_004321 NP_001230937 NP_004312 XM_005247022 XM_005247023 XM_005247024 XM_005247026 XM_005247027 XM_005247028 XM_006712601 XM_006712602 XM_006712603 XM_006712604 XM_006712605 XP_005247079 XP_005247080 XP_005247081 XP_005247083 XP_005247084 XP_005247085 XP_006712664 XP_006712665 XP_006712666 XP_006712667 XP_006712668 inside exon inside 58945 inside exon 0 24 43 inside transcription region
96895 74339 0.53 FALSE
316 chr5 146775122 146775284 163
73.46985 11975.586 12808373 12808535 394 10875 1.1914110 0.3116564 0.1668712 0.0969325 4.1901840 -9.012218e-01 -1.684904e+00 3.748985e+00 0.0010435 TRUE 0.0663012 TRUE DPYSL3 NM_001197294 NM_001387 NP_001184223 NP_001378 inside exon inside 114335 inside exon 0 13 14 inside transcription region
119248 115823 0.54 FALSE
317 chr15 65621728 65621935 208
57.56005 11972.490 5964972 5965179 184 8664 0.8081731 0.0375000 0.0000000 0.0000000 3.1951923 -1.000000e+100 -1.000000e+100 6.412868e+00 0.0010446 TRUE 0.0663012 TRUE IGDCC3 NM_004884 NP_004875 inside exon inside 26775 inside exon 0 12 12 inside transcription region
26982 6564 0.54 FALSE
318 chr3 65339308 65339488 181
65.99150 11944.462 7961601 7961781 214 3821 0.6635359 0.0000000 0.1116022 0.0000000 2.5425414 1.000000e+100 NaN 1.000000e+100 0.0010514 TRUE 0.0663012 TRUE MAGI1 NM_001033057 NM_004742 NM_015520 NP_001028229 NP_004733 NP_056335 XM_005265563 XM_005265564 XM_005265565 XM_005265566 XM_005265568 XM_005265570 XM_005265571 XM_005265574 XM_006713407 XM_006713408 XM_006713409 XM_006713410 XM_006713411 XM_006713412 XM_006713413 XM_006713414 XP_005265620 XP_005265621 XP_005265622 XP_005265623 XP_005265625 XP_005265627 XP_005265628 XP_005265631 XP_006713470 XP_006713471 XP_006713472 XP_006713473 XP_006713474 XP_006713475 XP_006713476 XP_006713477 downstream downstream 685021 NA NA NA 25 NA
684603 681232 0.54 FALSE
319 chr5 141690887 141691067 181
65.95700 11938.217 12324462 12324642 384 14439 0.5596685 0.0000000 0.0000000 0.1381215 2.1005525 NaN 1.000000e+100 1.000000e+100 0.0010532 TRUE 0.0663012 TRUE SPRY4 NM_001127496 NM_030964 NP_001120968 NP_112226 XM_005268518 XM_005268519 XM_006714798 XP_005268575 XP_005268576 XP_006714861 inside exon inside 13553 inside exon 0 3 3 3'UTR
14628 5556 0.54 FALSE
320 chr7 121680870 121681031 162
73.69138 11938.004 12249879 12250040 332 16420 0.6055556 0.0000000 0.0000000 0.0000000 2.4222222 NaN NaN 1.000000e+100 0.0010532 TRUE 0.0663012 TRUE PTPRZ1 NM_001206838 NM_001206839 NM_002851 NP_001193767 NP_001193768 NP_002842 XM_005250519 XM_006716076 XP_005250576 XP_006716139 inside exon inside 167711 inside exon 0 21 30 inside transcription region
188931 187720 0.54 FALSE
321 chr9 133995938 133996104 167
71.39268 11922.577 11059254 11059420 391 5341 1.5502994 0.0000000 0.3580838 0.0646707 5.7784431 1.000000e+100 1.000000e+100 1.000000e+100 0.0010582 TRUE 0.0664103 TRUE AIF1L NM_001002260 NM_001185095 NM_001185096 NM_031426 NP_001172024 NP_001172025 NP_113614 NR_033701 inside exon inside 17748 inside exon 0 5 5 3'UTR
20349 17441 0.54 FALSE
322 chrX 110790978 110791163 186
63.96994 11898.408 6862622 6862807 294 1078 2.5661290 0.8333333 0.6698925 0.5752688 8.1860215 -3.149641e-01 -5.346574e-01 3.296197e+00 0.0010634 TRUE 0.0665288 TRUE LINC00890 NR_033974 NA NA 0 NA NA NA 3 NA
0 0 0.54 FALSE
323 chr16 78013754 78013989 236
50.21285 11850.232 10470155 10470390 272 2496 0.6701271 0.0000000 0.1381356 0.0000000 2.5423729 1.000000e+100 NaN 1.000000e+100 0.0010777 TRUE 0.0668706 TRUE VAT1L NM_020927 NP_065978 inside exon inside 191271 inside exon 0 9 9 3'UTR
191518 189012 0.54 FALSE
324 chr16 3142137 3142352 216
54.74980 11825.957 1055654 1055869 35 10352 1.1351852 0.0046296 0.0000000 0.1870370 4.3490741 -1.000000e+100 5.336283e+00 9.875596e+00 0.0010847 TRUE 0.0668706 TRUE ZSCAN10 NM_001282415 NM_001282416 NM_032805 NP_001269344 NP_001269345 NP_116194 overlaps exon upstream inside 6941 overlaps exon upstream 0 2 5 5' UTR
10398 1160 0.54 FALSE
325 chr6 3226393 3226503 111
106.51895 11823.604 465722 465832 12 3330 5.5680180 0.0036036 0.0018018 0.0000000 22.2666667 -1.000000e+00 -1.000000e+100 1.259316e+01 0.0010853 TRUE 0.0668706 TRUE TUBB2B NM_178012 NP_821080 inside exon inside 1465 inside exon 0 3 4 inside transcription region
3473 2792 0.54 FALSE
326 chr4 41259626 41259754 129
91.65489 11823.481 3752998 3753126 117 11482 4.6410853 1.3550388 0.2155039 0.1162791 16.8775194 -2.652548e+00 -3.542671e+00 3.638697e+00 0.0010853 TRUE 0.0668706 TRUE UCHL1 NM_004181 NP_004172 inside exon inside 728 inside exon 0 2 8 5' UTR
11548 7357 0.54 FALSE
327 chr2 27172426 27172660 235
50.31005 11822.862 2271565 2271799 64 5028 0.6310638 0.0621277 0.0000000 0.0000000 2.4621277 -1.000000e+100 -1.000000e+100 5.308526e+00 0.0010855 TRUE 0.0668706 TRUE DPYSL5 NM_001253723 NM_001253724 NM_020134 NP_001240652 NP_001240653 NP_064519 inside exon inside 101134 inside exon 0 13 13 3'UTR
101927 48495 0.54 FALSE
328 chr4 62616011 62616318 308
38.32626 11804.490 4881892 4882199 152 3983 1.0715909 0.0000000 0.0000000 0.0000000 4.2863636 NaN NaN 1.000000e+100 0.0010916 TRUE 0.0670454 TRUE LPHN3 NM_015236 NP_056051 XM_006714153 XM_006714154 XM_006714155 XM_006714156 XP_006714216 XP_006714217 XP_006714218 XP_006714219 inside intron inside 17539 inside intron -16739 1 6 inside transcription region
202269 202149 0.54 FALSE
329 chr14 41989592 41989727 136
86.16566 11718.530 2092692 2092827 94 1895 1.0948529 0.0000000 0.0000000 0.0000000 4.3794118 NaN NaN 1.000000e+100 0.0011190 TRUE 0.0685202 TRUE LRFN5 NM_152447 NP_689660 XM_005267369 XP_005267426 XR_429293 upstream upstream 87037 NA NA NA 6 NA
296988 17549 0.55 FALSE
330 chr16 49669905 49670038 134
87.20490 11685.457 7114628 7114761 168 2767 0.7563433 0.0000000 0.0000000 0.0000000 3.0253731 NaN NaN 1.000000e+100 0.0011301 TRUE 0.0689859 TRUE ZNF423 NM_001271620 NM_015069 NP_001258549 NP_055884 XM_005255855 XM_005255856 XM_005255857 XM_006721171 XP_005255912 XP_005255913 XP_005255914 XP_006721234 inside exon inside 221792 inside exon 0 4 8 inside transcription region
367315 239592 0.55 FALSE
331 chr14 57267782 57267913 132
88.38140 11666.345 3575608 3575739 149 4503 0.6284091 0.0000000 0.0000000 0.0000000 2.5136364 NaN NaN 1.000000e+100 0.0011359 TRUE 0.0691329 TRUE OTX2 NM_001270523 NM_001270524 NM_001270525 NM_021728 NM_172337 NP_001257452 NP_001257453 NP_001257454 NP_068374 NP_758840 NR_073034 NR_073036 inside exon inside 9281 inside exon 0 4 4 3'UTR
9769 359 0.55 FALSE
332 chr22 44344664 44344764 101
115.16093 11631.254 5572908 5573008 142 6566 0.6579208 0.1465347 0.0000000 0.0000000 2.4851485 -1.000000e+100 -1.000000e+100 4.084018e+00 0.0011489 TRUE 0.0697121 TRUE PNPLA3 NM_025225 NP_079501 NA NA 0 NA NA NA 10 NA
0 0 0.55 FALSE
333 chr11 27655936 27656103 168
69.09647 11608.207 2973543 2973710 80 13488 0.7529762 0.1500000 0.0000000 0.0000000 2.8619048 -1.000000e+100 -1.000000e+100 4.253941e+00 0.0011581 TRUE 0.0697672 TRUE BDNF-AS NR_002832 NR_033312 NR_033313 NR_033314 NR_033315 NA NA 0 NA NA NA 7 NA
0 0 0.56 FALSE
334 chr16 51173206 51173326 121
95.85863 11598.895 7328382 7328502 178 4772 0.5727273 0.0000000 0.0000000 0.0000000 2.2909091 NaN NaN 1.000000e+100 0.0011602 TRUE 0.0697672 TRUE SALL1 NM_001127892 NM_002968 NP_001121364 NP_002959 XM_006721241 XP_006721304 inside exon inside 11857 inside exon 0 2 3 inside transcription region
14160 4818 0.56 FALSE
335 chr20 38902578 38902843 266
43.57949 11592.145 4403806 4404071 116 5560 3.4093985 0.0218045 0.3729323 0.0000000 13.2428571 4.096215e+00 -1.000000e+100 9.246372e+00 0.0011622 TRUE 0.0697672 TRUE MAFB NM_005461 NP_005452 downstream downstream 415033 NA NA NA 1 NA
3359 971 0.56 FALSE
336 chr6 105529996 105530269 274
42.28617 11586.411 9856997 9857270 278 4151 0.6666058 0.0000000 0.0000000 0.0000000 2.6664234 NaN NaN 1.000000e+100 0.0011637 TRUE 0.0697672 TRUE LIN28B NM_001004317 NP_001004317 XM_006715477 XP_006715540 inside exon inside 124022 inside exon 0 4 4 3'UTR
125233 99901 0.56 FALSE
337 chr15 55905633 55905785 153
75.53545 11556.924 4218238 4218390 141 5154 0.6356209 0.0000000 0.0000000 0.1071895 2.4352941 NaN 1.000000e+100 1.000000e+100 0.0011734 TRUE 0.0701420 TRUE PRTG NM_173814 NP_776175 XM_005254310 XM_005254311 XM_006720473 XP_005254367 XP_005254368 XP_006720536 XR_429451 inside exon inside 129392 inside exon 0 20 20 3'UTR
131438 122919 0.57 FALSE
338 chr12 97957748 97957905 158
73.08192 11546.943 10660195 10660352 300 1005 0.7142405 0.0886076 0.0000000 0.0000000 2.7683544 -1.000000e+100 -1.000000e+100 4.965454e+00 0.0011774 TRUE 0.0701762 TRUE RMST NR_024037 NA NA 0 NA NA NA 7 NA
0 0 0.57 FALSE
339 chr21 44480539 44480656 118
97.69163 11527.612 2431197 2431314 56 13860 1.4830508 0.3152542 0.2338983 0.0000000 5.3830508 -4.306344e-01 -1.000000e+100 4.093836e+00 0.0011838 TRUE 0.0703451 TRUE CBS NM_000071 NM_001178008 NM_001178009 NP_000062 NP_001171479 NP_001171480 XM_006724057 XP_006724120 overlaps exon downstream inside 15816 overlaps exon downstream 0 12 18 inside transcription region
23171 18313 0.57 FALSE
340 chr16 78013578 78013739 162
71.05265 11510.530 10469993 10470154 272 2496 0.8441358 0.0000000 0.0345679 0.0160494 3.3259259 1.000000e+100 1.000000e+100 1.000000e+100 0.0011898 TRUE 0.0704939 TRUE VAT1L NM_020927 NP_065978 inside exon inside 191095 inside exon 0 9 9 3'UTR
191518 189012 0.57 FALSE
341 chr21 44485497 44485631 135
85.11997 11491.197 2431886 2432020 56 13860 3.3344444 0.4400000 0.7466667 0.1777778 11.9733333 7.629608e-01 -1.307429e+00 4.766178e+00 0.0011979 TRUE 0.0705618 TRUE CBS NM_000071 NM_001178008 NM_001178009 NP_000062 NP_001171479 NP_001171480 XM_006724057 XP_006724120 inside exon inside 10841 inside exon 0 7 18 inside transcription region
23171 18313 0.57 FALSE
342 chr6 120784755 120784945 191
60.09257 11477.681 11585308 11585498 321 1938 1.4573298 0.0000000 0.2701571 0.1183246 5.4408377 1.000000e+100 1.000000e+100 1.000000e+100 0.0012019 TRUE 0.0705618 TRUE TBC1D32 NM_152730 NP_689943 NR_104452 XM_005266861 XP_005266918 downstream downstream 870699 NA NA NA 32 NA
255017 253659 0.57 FALSE
343 chr4 189020189 189020329 141
81.33397 11468.090 12668285 12668425 499 3316 0.4950355 0.0000000 0.0000000 0.0000000 1.9801418 NaN NaN 1.000000e+100 0.0012047 TRUE 0.0705618 TRUE TRIML2 NM_173553 NP_775824 XM_006714136 XP_006714199 inside exon inside 10093 inside exon 0 5 5 inside transcription region
10639 6378 0.57 FALSE
344 chr13 100638130 100638280 151
75.86444 11455.530 5450767 5450917 193 5501 1.1099338 0.0000000 0.0000000 0.0000000 4.4397351 NaN NaN 1.000000e+100 0.0012091 TRUE 0.0705618 TRUE ZIC2 NM_007129 NP_009060 inside exon inside 4104 inside exon 0 3 3 3'UTR
4993 3617 0.57 FALSE
345 chr15 43891356 43891586 231
49.54871 11445.752 2700119 2700349 82 5237 1.9813853 0.4294372 0.0000000 0.0874459 7.4086580 -1.000000e+100 -2.295985e+00 4.108693e+00 0.0012123 TRUE 0.0705618 TRUE CKMT1B NM_020990 NP_066270 XM_005254150 XP_005254207 NA NA 0 NA NA NA 9 NA
0 0 0.57 FALSE
346 chr4 41262664 41262814 151
75.79535 11445.098 3753127 3753277 117 11482 7.8506623 2.9470199 0.5033113 0.7417219 27.2105960 -2.549734e+00 -1.990307e+00 3.206840e+00 0.0012128 TRUE 0.0705618 TRUE UCHL1 NM_004181 NP_004172 inside exon inside 3766 inside exon 0 3 8 overlaps 5' UTR
11548 7357 0.57 FALSE
347 chr4 190400982 190401080 99
115.47696 11432.219 12676205 12676303 502 2056 0.7848485 0.0000000 0.2000000 0.0000000 2.9393939 1.000000e+100 NaN 1.000000e+100 0.0012177 TRUE 0.0705618 TRUE FRG1 NM_004477 NP_004468 XM_005262879 XM_005262880 XM_006714166 XM_006725445 XM_006725446 XM_006725447 XP_005262936 XP_005262937 XP_006714229 XP_006725508 XP_006725509 XP_006725510 upstream upstream 460894 NA NA NA 9 NA
22385 22119 0.57 FALSE
348 chr11 96461851 96462014 164
69.67388 11426.516 10912365 10912528 330 1985 2.3356707 0.1426829 0.2268293 0.3195122 8.6536585 6.687941e-01 1.163058e+00 5.922426e+00 0.0012206 TRUE 0.0705618 TRUE JRKL-AS1 NR_047481 NA NA 0 NA NA NA 5 NA
0 0 0.57 FALSE
349 chr3 122628919 122629057 139
82.12934 11415.978 11760579 11760717 365 2945 0.5075540 0.0000000 0.0000000 0.0086331 2.0215827 NaN 1.000000e+100 1.000000e+100 0.0012255 TRUE 0.0705618 TRUE SEMA5B NM_001031702 NM_001256346 NM_001256347 NM_001256348 NM_018987 NP_001026872 NP_001243275 NP_001243276 NP_001243277 NR_046079 NA NA 0 NA NA NA 23 NA
0 0 0.57 FALSE
350 chr13 43439431 43439631 201
56.78489 11413.763 2379641 2379841 57 13438 0.6791045 0.0000000 0.0000000 0.0467662 2.6696517 NaN 1.000000e+100 1.000000e+100 0.0012259 TRUE 0.0705618 TRUE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 126776 NA NA NA 13 NA
105883 103915 0.57 FALSE
351 chr14 93399027 93399196 170
66.97446 11385.658 8679741 8679910 253 12111 1.0373529 0.0929412 0.0000000 0.0000000 4.0564706 -1.000000e+100 -1.000000e+100 5.447763e+00 0.0012375 TRUE 0.0710218 TRUE CHGA NM_001275 NP_001266 XM_005267292 XM_006725160 XP_005267349 XP_006725223 inside exon inside 9582 inside exon 0 6 7 inside transcription region
12193 11524 0.57 FALSE
352 chrX 2779619 2779763 145
78.26517 11348.450 516834 516978 8 1880 0.7620690 0.0000000 0.0000000 0.0000000 3.0482759 NaN NaN 1.000000e+100 0.0012501 TRUE 0.0713508 TRUE GYG2 NM_001079855 NM_001184702 NM_001184703 NM_001184704 NM_003918 NP_001073324 NP_001171631 NP_001171632 NP_001171633 NP_003909 XM_005274617 XM_005274618 XM_005274619 XM_005274621 XM_005274622 XM_006724521 XM_006724522 XP_005274674 XP_005274675 XP_005274676 XP_005274678 XP_005274679 XP_006724584 XP_006724585 inside exon inside 6585 inside exon 0 4 6 inside transcription region
27827 26079 0.57 FALSE
353 chr1 17301331 17301518 188
60.35846 11347.390 2835450 2835637 74 6061 2.0590426 0.1680851 0.1127660 0.0000000 7.9553191 -5.758603e-01 -1.000000e+100 5.564656e+00 0.0012503 TRUE 0.0713508 TRUE MFAP2 NM_001135247 NM_001135248 NM_002403 NM_017459 NP_001128719 NP_001128720 NP_002394 NP_059453 inside exon inside 6563 inside exon 0 9 9 overlaps 3'UTR
7082 3353 0.57 FALSE
354 chr3 57126779 57126910 132
85.86415 11334.067 7280474 7280605 180 8154 0.6424242 0.0000000 0.0000000 0.0000000 2.5696970 NaN NaN 1.000000e+100 0.0012566 TRUE 0.0715092 TRUE IL17RD NM_017563 NP_060033 XM_005265238 XM_006713209 XP_005265295 XP_006713272 inside exon inside 77421 inside exon 0 14 14 3'UTR
80321 13261 0.57 FALSE
355 chr18 6950781 6950915 135
83.82254 11316.044 515673 515807 17 3800 0.4688889 0.0000000 0.0000000 0.0000000 1.8755556 NaN NaN 1.000000e+100 0.0012637 TRUE 0.0717128 TRUE LAMA1 NM_005559 NP_005550 inside exon inside 166898 inside exon 0 57 62 inside transcription region
176070 95663 0.57 FALSE
356 chr2 77320588 77320749 162
69.69347 11290.342 8969230 8969391 213 11162 0.8793210 0.0000000 0.0000000 0.0000000 3.5172840 NaN NaN 1.000000e+100 0.0012753 TRUE 0.0721631 TRUE LRRTM4 NM_001134745 NM_001282924 NM_001282928 NM_024993 NP_001128217 NP_001269853 NP_001269857 NP_079269 inside intron inside 428753 inside intron 344546 4 4 inside transcription region
774652 772976 0.59 FALSE
357 chr16 65265129 65265283 155
72.63022 11257.683 8195835 8195989 214 5478 1.1048387 0.0116129 0.0761290 0.0000000 4.3316129 2.712718e+00 -1.000000e+100 8.543032e+00 0.0012860 TRUE 0.0725651 TRUE LINC00922 NM_001101346 NR_027755 NA NA 0 NA NA NA 6 NA
0 0 0.59 FALSE
358 chr2 5833489 5833608 120
93.66695 11240.034 203557 203676 16 8660 0.7125000 0.0000000 0.0000000 0.0000000 2.8500000 NaN NaN 1.000000e+100 0.0012954 TRUE 0.0728918 TRUE SOX11 NM_003108 NP_003099 inside exon inside 690 inside exon 0 1 1 inside transcription region
8718 1325 0.59 FALSE
359 chr4 189012646 189012806 161
69.63750 11211.637 12668034 12668194 498 639 0.7276398 0.2335404 0.0000000 0.0000000 2.6770186 -1.000000e+100 -1.000000e+100 3.518883e+00 0.0013088 TRUE 0.0734443 TRUE TRIML2 NM_173553 NP_775824 XM_006714136 XP_006714199 inside exon inside 13938 inside exon 0 8 8 inside transcription region
14317 13995 0.59 FALSE
360 chr7 121684476 121684622 147
76.05366 11179.888 12250164 12250310 332 16420 0.9622449 0.0000000 0.0000000 0.0000000 3.8489796 NaN NaN 1.000000e+100 0.0013221 TRUE 0.0738340 TRUE PTPRZ1 NM_001206838 NM_001206839 NM_002851 NP_001193767 NP_001193768 NP_002842 XM_005250519 XM_006716076 XP_005250576 XP_006716139 inside exon inside 171317 inside exon 0 23 30 inside transcription region
188931 187720 0.60 FALSE
361 chr20 38900268 38900415 148
75.53378 11178.999 4402023 4402170 116 5560 0.4331081 0.0000000 0.0000000 0.0000000 1.7324324 NaN NaN 1.000000e+100 0.0013231 TRUE 0.0738340 TRUE MAFB NM_005461 NP_005452 downstream downstream 417461 NA NA NA 1 NA
3359 971 0.60 FALSE
362 chr19 54446205 54446446 242
46.13468 11164.593 11721484 11721725 396 1943 0.7371901 0.0000000 0.0000000 0.0000000 2.9487603 NaN NaN 1.000000e+100 0.0013304 TRUE 0.0738593 TRUE CACNG7 NM_031896 NP_114102 XM_005259124 XM_005259125 XP_005259181 XP_005259182 inside exon inside 30214 inside exon 0 5 5 3'UTR
30978 29461 0.61 FALSE
363 chr13 56144625 56144732 108
103.36411 11163.323 3920131 3920238 121 13379 0.5703704 0.0000000 0.0000000 0.0000000 2.2814815 NaN NaN 1.000000e+100 0.0013309 TRUE 0.0738593 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.61 FALSE
364 chr12 48366904 48367056 153
72.83838 11144.272 5325359 5325511 133 9891 0.6624183 0.0000000 0.0000000 0.0000000 2.6496732 NaN NaN 1.000000e+100 0.0013382 TRUE 0.0740455 TRUE COL2A1 NM_001844 NM_033150 NP_001835 NP_149162 XM_006719242 XP_006719305 inside exon inside 31229 inside exon 0 53 53 3'UTR
31537 30914 0.61 FALSE
365 chr3 32939107 32939302 196
56.81909 11136.543 3400027 3400222 82 7451 3.4535714 0.7877551 1.1061224 0.6693878 11.2510204 4.896920e-01 -2.349050e-01 3.836165e+00 0.0013416 TRUE 0.0740455 TRUE TRIM71 NM_001039111 NP_001034200 downstream downstream 79597 NA NA NA 4 NA
74261 73730 0.61 FALSE
366 chr19 17715046 17715179 134
82.90644 11109.463 4872273 4872406 149 4082 0.7884328 0.0000000 0.1507463 0.0000000 3.0029851 1.000000e+100 NaN 1.000000e+100 0.0013510 TRUE 0.0743610 TRUE UNC13A NM_001080421 NP_001073890 XM_006722692 XP_006722755 inside exon inside 83871 inside exon 0 44 44 3'UTR
86913 82145 0.61 FALSE
367 chr1 223200941 223201125 185
59.94251 11089.365 26369149 26369333 754 8216 1.4351351 0.0000000 0.0000000 0.0000000 5.7405405 NaN NaN 1.000000e+100 0.0013593 TRUE 0.0746125 TRUE DISP1 NM_032890 NP_116279 XM_005273335 XM_005273336 XM_006711592 XM_006711593 XM_006711594 XM_006711595 XP_005273392 XP_005273393 XP_006711655 XP_006711656 XP_006711657 XP_006711658 downstream downstream 212510 NA NA NA 10 NA
190906 63148 0.61 FALSE
368 chr12 7947540 7947867 328
33.73228 11064.188 1192013 1192340 43 6141 1.1428354 0.1231707 0.3371951 0.1231707 3.9878049 1.452924e+00 0.000000e+00 5.016863e+00 0.0013703 TRUE 0.0750136 TRUE NANOG NM_024865 NP_079141 XM_005253484 XP_005253541 inside exon inside 5545 inside exon 0 4 4 overlaps 3'UTR
6660 5480 0.61 FALSE
369 chr2 189460247 189460602 356
31.04512 11052.062 18112127 18112482 489 1531 0.5483146 0.0000000 0.0000000 0.0000000 2.1932584 NaN NaN 1.000000e+100 0.0013765 TRUE 0.0751469 TRUE GULP1 NM_001252668 NM_001252669 NM_016315 NP_001239597 NP_001239598 NP_057399 NR_045562 NR_045563 XM_006712580 XM_006712581 XM_006712582 XM_006712583 XM_006712584 XM_006712585 XM_006712586 XM_006712587 XM_006712588 XM_006712589 XM_006712590 XM_006712591 XP_006712643 XP_006712644 XP_006712645 XP_006712646 XP_006712647 XP_006712648 XP_006712649 XP_006712650 XP_006712651 XP_006712652 XP_006712653 XP_006712654 inside exon inside 302857 inside exon 0 13 13 3'UTR
303262 116308 0.62 FALSE
370 chrX 2799342 2799487 146
75.57142 11033.427 517179 517324 11 1566 0.7931507 0.0000000 0.0000000 0.0000000 3.1726027 NaN NaN 1.000000e+100 0.0013857 TRUE 0.0751645 TRUE GYG2 NM_001079855 NM_001184702 NM_001184703 NM_001184704 NM_003918 NP_001073324 NP_001171631 NP_001171632 NP_001171633 NP_003909 XM_005274617 XM_005274618 XM_005274619 XM_005274621 XM_005274622 XM_006724521 XM_006724522 XP_005274674 XP_005274675 XP_005274676 XP_005274678 XP_005274679 XP_006724584 XP_006724585 inside exon inside 26308 inside exon 0 6 6 3'UTR
27827 26079 0.62 FALSE
371 chr12 54982309 54982408 100
110.32664 11032.664 6731995 6732094 171 100 0.4940000 0.0000000 0.0000000 0.0000000 1.9760000 NaN NaN 1.000000e+100 0.0013862 TRUE 0.0751645 TRUE PPP1R1A NM_006741 NP_006732 XM_005268995 XM_006719471 XP_005269052 XP_006719534 inside exon inside 35 inside exon 0 1 7 5' UTR
9419 8101 0.62 FALSE
372 chr7 131186015 131186277 263
41.93117 11027.897 13362697 13362959 370 10803 7.8420152 2.1437262 4.9034221 4.0653992 20.2555133 1.193668e+00 9.232764e-01 3.240122e+00 0.0013880 TRUE 0.0751645 TRUE PODXL NM_001018111 NM_005397 NP_001018121 NP_005388 inside exon inside 55099 inside exon 0 8 8 3'UTR
56355 52048 0.62 FALSE
373 chr16 65264698 65264912 215
51.20562 11009.208 8195435 8195649 214 5478 0.8379070 0.0000000 0.0000000 0.0000000 3.3516279 NaN NaN 1.000000e+100 0.0013976 TRUE 0.0752588 TRUE LINC00922 NM_001101346 NR_027755 NA NA 0 NA NA NA 6 NA
0 0 0.62 FALSE
374 chr4 55945391 55945583 193
56.92465 10986.457 4547257 4547449 135 3976 0.7344560 0.2176166 0.2113990 0.0000000 2.5088083 -4.182020e-02 -1.000000e+100 3.527142e+00 0.0014063 TRUE 0.0752588 TRUE KDR NM_002253 NP_002244 inside exon inside 46179 inside exon 0 30 30 3'UTR
47336 45352 0.62 FALSE
375 chr13 56150941 56151071 131
83.83355 10982.195 3923090 3923220 121 13379 0.5458015 0.0000000 0.0000000 0.0000000 2.1832061 NaN NaN 1.000000e+100 0.0014092 TRUE 0.0752588 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.62 FALSE
376 chr13 56150772 56150918 147
74.63068 10970.710 3922943 3923089 121 13379 0.5340136 0.0802721 0.0000000 0.0000000 2.0557823 -1.000000e+100 -1.000000e+100 4.678645e+00 0.0014148 TRUE 0.0752588 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.62 FALSE
377 chr2 67559010 67559162 153
71.65524 10963.252 7342633 7342785 170 8050 0.7274510 0.1620915 0.0000000 0.0000000 2.7477124 -1.000000e+100 -1.000000e+100 4.083351e+00 0.0014177 TRUE 0.0752588 TRUE ETAA1 NM_019002 NP_061875 XM_005264374 XM_005264375 XM_005264376 XM_005264377 XM_005264378 XP_005264431 XP_005264432 XP_005264433 XP_005264434 XP_005264435 upstream upstream 65280 NA NA NA 6 NA
13091 12589 0.62 FALSE
378 chr8 77557275 77557627 353
31.04512 10958.927 5854470 5854822 214 900 0.3529745 0.0000000 0.0000000 0.0000000 1.4118980 NaN NaN 1.000000e+100 0.0014198 TRUE 0.0752588 TRUE ZFHX4-AS1 NR_024360 NA NA 0 NA NA NA 4 NA
0 0 0.62 FALSE
379 chr20 62073759 62073884 126
86.94306 10954.826 7028104 7028229 193 8206 1.0146825 0.0000000 0.1396825 0.1253968 3.7936508 1.000000e+100 1.000000e+100 1.000000e+100 0.0014216 TRUE 0.0752588 TRUE KCNQ2 NM_004518 NM_172106 NM_172107 NM_172108 NM_172109 NP_004509 NP_742104 NP_742105 NP_742106 NP_742107 XM_006723787 XM_006723788 XM_006723789 XM_006723790 XM_006723791 XM_006723792 XP_006723850 XP_006723851 XP_006723852 XP_006723853 XP_006723854 XP_006723855 inside exon inside 30109 inside exon 0 5 8 inside transcription region
38961 38718 0.62 FALSE
380 chr11 27636430 27636731 302
36.26158 10950.998 2969161 2969462 79 3618 0.6687086 0.0000000 0.0000000 0.2476821 2.4271523 NaN 1.000000e+100 1.000000e+100 0.0014234 TRUE 0.0752588 TRUE BDNF-AS NR_002832 NR_033312 NR_033313 NR_033314 NR_033315 NA NA 0 NA NA NA 7 NA
0 0 0.62 FALSE
381 chr5 141693923 141694126 204
53.68028 10950.777 12326281 12326484 384 14439 0.6747549 0.0000000 0.0990196 0.0000000 2.6000000 1.000000e+100 NaN 1.000000e+100 0.0014234 TRUE 0.0752588 TRUE SPRY4 NM_001127496 NM_030964 NP_001120968 NP_112226 XM_005268518 XM_005268519 XM_006714798 XP_005268575 XP_005268576 XP_006714861 inside exon inside 10494 inside exon 0 3 3 inside transcription region
14628 5556 0.62 FALSE
382 chr15 43990212 43990346 135
80.90075 10921.601 2727625 2727759 83 5230 1.1507407 0.0000000 0.0000000 0.0000000 4.6029630 NaN NaN 1.000000e+100 0.0014362 TRUE 0.0755484 TRUE CKMT1A NM_001015001 NP_001015001 XM_005254498 XP_005254555 inside exon inside 5128 inside exon 0 8 10 inside transcription region
6336 5038 0.63 FALSE
383 chr1 55492412 55492512 101
108.12961 10921.091 9838569 9838669 249 2497 1.6559406 0.0000000 0.0000000 0.0000000 6.6237624 NaN NaN 1.000000e+100 0.0014363 TRUE 0.0755484 TRUE PCSK9 NM_174936 NP_777596 NR_110451 NA NA 0 NA NA NA 6 NA
0 0 0.63 FALSE
384 chr13 56151361 56151503 143
75.85189 10846.821 3923374 3923516 121 13379 1.0342657 0.0391608 0.0000000 0.0000000 4.0979021 -1.000000e+100 -1.000000e+100 6.709330e+00 0.0014725 TRUE 0.0770996 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.63 FALSE
385 chr11 27638052 27638211 160
67.77981 10844.769 2970400 2970559 79 3618 0.6971875 0.0000000 0.0000000 0.0337500 2.7550000 NaN 1.000000e+100 1.000000e+100 0.0014735 TRUE 0.0770996 TRUE BDNF-AS NR_002832 NR_033312 NR_033313 NR_033314 NR_033315 NA NA 0 NA NA NA 7 NA
0 0 0.63 FALSE
386 chr16 65263832 65264026 195
55.34134 10791.561 8194600 8194794 214 5478 2.8489744 1.4656410 0.6625641 0.3323077 8.9353846 -1.145400e+00 -2.140940e+00 2.607998e+00 0.0014994 TRUE 0.0780522 TRUE LINC00922 NM_001101346 NR_027755 NA NA 0 NA NA NA 6 NA
0 0 0.63 FALSE
387 chr17 47115573 47115811 239
45.15214 10791.360 9731144 9731382 231 18864 0.5912134 0.0000000 0.0000000 0.0000000 2.3648536 NaN NaN 1.000000e+100 0.0014994 TRUE 0.0780522 TRUE IGF2BP1 NM_001160423 NM_006546 NP_001153895 NP_006537 XM_005256955 XP_005257012 inside intron inside 40799 inside intron 2929 6 13 inside transcription region
58733 51698 0.63 FALSE
388 chr7 121653691 121653875 185
58.24465 10775.261 12248841 12249025 330 3506 0.5764865 0.0000000 0.0000000 0.0000000 2.3059459 NaN NaN 1.000000e+100 0.0015082 TRUE 0.0783058 TRUE PTPRZ1 NM_001206838 NM_001206839 NM_002851 NP_001193767 NP_001193768 NP_002842 XM_005250519 XM_006716076 XP_005250576 XP_006716139 inside intron inside 140532 inside intron -2328 12 30 inside transcription region
188931 187720 0.63 FALSE
389 chr6 31132905 31133063 159
67.61051 10750.071 3619390 3619548 80 1705 16.7701258 0.9081761 1.0012579 0.5308176 64.6402516 1.407696e-01 -7.747558e-01 6.153317e+00 0.0015225 TRUE 0.0788438 TRUE POU5F1 NM_001173531 NM_001285986 NM_001285987 NM_002701 NM_203289 NP_001167002 NP_001272915 NP_001272916 NP_002692 NP_976034 inside exon inside 5388 inside exon 0 4 5 inside transcription region
6337 6019 0.63 FALSE
390 chr7 150037189 150037293 105
102.16034 10726.836 15684345 15684449 431 3322 4.7109524 0.1561905 0.5809524 0.8895238 17.2171429 1.895113e+00 2.509727e+00 6.784395e+00 0.0015342 TRUE 0.0792449 TRUE RARRES2 NM_002889 NP_002880 XM_005250033 XP_005250090 inside exon inside 1470 inside exon 0 3 6 inside transcription region
3356 1984 0.63 FALSE
391 chr6 21367093 21367245 153
70.03319 10715.079 2378261 2378413 41 5423 1.1058824 0.0797386 0.0013072 0.0339869 4.3084967 -5.930737e+00 -1.230298e+00 5.755763e+00 0.0015403 TRUE 0.0793074 TRUE CDKAL1 NM_017774 NP_060244 XM_006715127 XM_006715128 XP_006715190 XP_006715191 downstream downstream 832405 NA NA NA 16 NA
697946 684688 0.63 FALSE
392 chr7 150037525 150037718 194
55.19845 10708.499 15684491 15684684 431 3322 3.4902062 0.7536082 0.6340206 0.2628866 12.3103093 -2.492850e-01 -1.519374e+00 4.029908e+00 0.0015432 TRUE 0.0793074 TRUE RARRES2 NM_002889 NP_002880 XM_005250033 XP_005250090 inside exon inside 1045 inside exon 0 2 6 overlaps 5' UTR
3356 1984 0.63 FALSE
393 chr3 57125252 57125427 176
60.73367 10689.125 7279420 7279595 180 8154 0.6880682 0.0000000 0.0000000 0.0000000 2.7522727 NaN NaN 1.000000e+100 0.0015552 TRUE 0.0793728 TRUE IL17RD NM_017563 NP_060033 XM_005265238 XM_006713209 XP_005265295 XP_006713272 inside exon inside 78904 inside exon 0 14 14 3'UTR
80321 13261 0.63 FALSE
394 chr21 44478255 44478363 109
98.06521 10689.108 2430584 2430692 56 13860 4.0440367 0.2752294 0.4935780 0.1834862 15.2238532 8.426437e-01 -5.849625e-01 5.789555e+00 0.0015552 TRUE 0.0793728 TRUE CBS NM_000071 NM_001178008 NM_001178009 NP_000062 NP_001171479 NP_001171480 XM_006724057 XP_006724120 inside exon inside 18109 inside exon 0 15 18 inside transcription region
23171 18313 0.63 FALSE
395 chr13 51746073 51746203 131
81.55545 10683.764 3595937 3596067 92 10662 1.2007634 0.0427481 0.0000000 0.0000000 4.7603053 -1.000000e+100 -1.000000e+100 6.799050e+00 0.0015583 TRUE 0.0793728 TRUE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.63 FALSE
396 chr15 73996593 73996813 221
48.32318 10679.422 7120244 7120464 215 4815 1.4875566 0.0696833 0.2352941 0.5438914 5.1013575 1.755581e+00 2.964435e+00 6.193925e+00 0.0015603 TRUE 0.0793728 TRUE CD276 NM_001024736 NM_025240 NP_001019907 NP_079516 XM_005254699 XM_005254700 XP_005254756 XP_005254757 inside exon inside 19971 inside exon 0 6 10 inside transcription region
30237 13279 0.63 FALSE
397 chr8 15621712 15621981 270
39.50314 10665.848 1075970 1076239 36 436 0.7605556 0.0000000 0.0000000 0.0000000 3.0422222 NaN NaN 1.000000e+100 0.0015694 TRUE 0.0794420 TRUE TUSC3 NM_006765 NM_178234 NP_006756 NP_839952 XM_005273646 XM_005273647 XM_005273648 XP_005273703 XP_005273704 XP_005273705 NA NA 0 NA NA NA 2 NA
0 0 0.63 FALSE
398 chrX 113837320 113837467 148
72.06371 10665.429 6945132 6945279 300 5470 3.4337838 0.0932432 0.0364865 0.0000000 13.6054054 -1.353637e+00 -1.000000e+100 7.188965e+00 0.0015695 TRUE 0.0794420 TRUE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 inside intron inside 18769 inside intron 10806 2 7 5' UTR
326073 180632 0.63 FALSE
399 chr12 7948253 7948463 211
50.35167 10624.202 1192630 1192840 43 6141 1.2445498 0.1109005 0.3355450 0.2426540 4.2890995 1.597241e+00 1.129635e+00 5.273337e+00 0.0015924 TRUE 0.0802457 TRUE NANOG NM_024865 NP_079141 XM_005253484 XP_005253541 inside exon inside 6258 inside exon 0 4 4 3'UTR
6660 5480 0.64 FALSE
400 chr3 54671898 54672038 141
75.33654 10622.452 7095493 7095633 171 7351 4.3879433 0.4170213 0.3730496 0.5900709 16.1716312 -1.607534e-01 5.007674e-01 5.277200e+00 0.0015934 TRUE 0.0802457 TRUE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.64 FALSE
401 chr11 12965225 12965407 183
57.93157 10601.477 2051642 2051824 45 1584 0.8133880 0.3737705 0.0000000 0.1071038 2.7726776 -1.000000e+100 -1.803143e+00 2.891055e+00 0.0016041 TRUE 0.0803015 TRUE TEAD1 NM_021961 NP_068780 inside exon inside 63970 inside exon 0 7 7 3'UTR
65029 57481 0.64 FALSE
402 chr2 164459483 164459607 125
84.79950 10599.938 16027165 16027289 417 3078 0.6424000 0.0000000 0.0000000 0.0000000 2.5696000 NaN NaN 1.000000e+100 0.0016047 TRUE 0.0803015 TRUE FIGN NM_018086 NP_060556 XM_005246661 XM_005246662 XP_005246718 XP_005246719 downstream downstream 132906 NA NA NA 3 NA
128395 125375 0.64 FALSE
403 chr13 51744244 51744364 121
87.44572 10580.932 3594431 3594551 92 10662 0.5309917 0.0000000 0.0000000 0.0000000 2.1239669 NaN NaN 1.000000e+100 0.0016146 TRUE 0.0803015 TRUE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.65 FALSE
404 chr17 47123252 47123375 124
85.29728 10576.863 9731893 9732016 231 18864 0.7254032 0.0000000 0.0000000 0.0000000 2.9016129 NaN NaN 1.000000e+100 0.0016172 TRUE 0.0803015 TRUE IGF2BP1 NM_001160423 NM_006546 NP_001153895 NP_006537 XM_005256955 XP_005257012 inside exon inside 48478 inside exon 0 11 13 inside transcription region
58733 51698 0.65 FALSE
405 chr1 26737877 26738073 197
53.62101 10563.339 4577539 4577735 114 2417 3.0578680 0.0000000 0.0000000 0.0000000 12.2314721 NaN NaN 1.000000e+100 0.0016250 TRUE 0.0803015 TRUE LIN28A NM_024674 NP_078950 XM_006710899 XM_006710900 XP_006710962 XP_006710963 inside exon inside 608 inside exon 0 2 4 inside transcription region
18950 15566 0.65 FALSE
406 chr15 26792227 26792327 101
104.56038 10560.599 475324 475424 11 4122 0.7787129 0.0000000 0.0000000 0.0000000 3.1148515 NaN NaN 1.000000e+100 0.0016271 TRUE 0.0803015 TRUE GABRB3 NM_000814 NM_001191320 NM_001191321 NM_001278631 NM_021912 NP_000805 NP_001178249 NP_001178250 NP_001265560 NP_068712 NR_103801 inside exon inside 392359 inside exon 0 10 10 3'UTR
395992 391643 0.65 FALSE
407 chr13 56157678 56157780 103
102.49381 10556.863 3927811 3927913 121 13379 0.4733010 0.0000000 0.0000000 0.0000000 1.8932039 NaN NaN 1.000000e+100 0.0016290 TRUE 0.0803015 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.65 FALSE
408 chr15 26791985 26792215 231
45.57193 10527.116 475093 475323 11 4122 0.5785714 0.0000000 0.0000000 0.0000000 2.3142857 NaN NaN 1.000000e+100 0.0016438 TRUE 0.0803015 TRUE GABRB3 NM_000814 NM_001191320 NM_001191321 NM_001278631 NM_021912 NP_000805 NP_001178249 NP_001178250 NP_001265560 NP_068712 NR_103801 inside exon inside 392471 inside exon 0 10 10 3'UTR
395992 391643 0.65 FALSE
409 chr6 3225664 3225927 264
39.86839 10525.255 465301 465564 12 3330 20.8198864 11.7886364 14.7166667 9.4219697 47.3522727 3.200541e-01 -3.232962e-01 2.006037e+00 0.0016451 TRUE 0.0803015 TRUE TUBB2B NM_178012 NP_821080 inside exon inside 2041 inside exon 0 4 4 inside transcription region
3473 2792 0.65 FALSE
410 chr12 110719136 110719284 149
70.60827 10520.632 12183242 12183390 332 149 11.1996644 32.4308725 5.0899329 5.2496644 2.0281879 -2.671649e+00 -2.627071e+00 -3.999105e+00 0.0016472 TRUE 0.0803015 TRUE ATP2A2 NM_001135765 NM_001681 NM_170665 NP_001672 NP_733765 XM_005253888 XP_005253945 XR_243009 inside exon inside 104 inside exon 0 1 21 5' UTR
69865 68515 0.65 FALSE
411 chr6 132228048 132228148 101
104.15843 10520.001 12338916 12339016 348 11438 0.7702970 0.0000000 0.0000000 0.0000000 3.0811881 NaN NaN 1.000000e+100 0.0016477 TRUE 0.0803015 TRUE ENPP1 NM_006208 NP_006199 XM_005267017 XP_005267074 downstream downstream 98892 NA NA NA 25 NA
87139 82475 0.65 FALSE
412 chr1 223198377 223198524 148
71.06830 10518.108 26367074 26367221 754 8216 2.6807432 0.1216216 0.2837838 0.4621622 9.8554054 1.222392e+00 1.925999e+00 6.340444e+00 0.0016495 TRUE 0.0803015 TRUE DISP1 NM_032890 NP_116279 XM_005273335 XM_005273336 XM_006711592 XM_006711593 XM_006711594 XM_006711595 XP_005273392 XP_005273393 XP_006711655 XP_006711656 XP_006711657 XP_006711658 downstream downstream 209946 NA NA NA 10 NA
190906 63148 0.65 FALSE
413 chr13 56149799 56149905 107
98.29383 10517.440 3922219 3922325 121 13379 0.8752336 0.0000000 0.0000000 0.0000000 3.5009346 NaN NaN 1.000000e+100 0.0016498 TRUE 0.0803015 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.65 FALSE
414 chrX 5809466 5809630 165
63.71923 10513.672 648990 649154 19 2072 0.4406061 0.0715152 0.0000000 0.0000000 1.6909091 -1.000000e+100 -1.000000e+100 4.563406e+00 0.0016527 TRUE 0.0803015 TRUE NLGN4X NM_001282145 NM_001282146 NM_020742 NM_181332 NP_001269074 NP_001269075 NP_065793 NP_851849 XM_005274564 XM_005274565 XM_005274566 XM_005274568 XM_006724504 XP_005274621 XP_005274622 XP_005274623 XP_005274625 XP_006724567 inside exon inside 337076 inside exon 0 7 7 3'UTR
338623 258649 0.65 FALSE
415 chr22 44345535 44345636 102
103.00462 10506.471 5573039 5573140 142 6566 0.6004902 0.0000000 0.0000000 0.0000000 2.4019608 NaN NaN 1.000000e+100 0.0016565 TRUE 0.0803015 TRUE PNPLA3 NM_025225 NP_079501 NA NA 0 NA NA NA 10 NA
0 0 0.65 FALSE
416 chr4 93524782 93524901 120
87.50493 10500.592 7118893 7119012 252 3836 0.4733333 0.0000000 0.0000000 0.0000000 1.8933333 NaN NaN 1.000000e+100 0.0016582 TRUE 0.0803015 TRUE GRID2 NM_001286838 NM_001510 NP_001273767 NP_001501 XM_006714195 XP_006714258 inside intron inside 299232 inside intron -13345 2 15 inside transcription region
1468099 1467841 0.65 FALSE
417 chr16 65264044 65264301 258
40.62704 10481.776 8194812 8195069 214 5478 2.1147287 0.0457364 0.1589147 0.1186047 8.1356589 1.796837e+00 1.374745e+00 7.474772e+00 0.0016706 TRUE 0.0805505 TRUE LINC00922 NM_001101346 NR_027755 NA NA 0 NA NA NA 6 NA
0 0 0.65 FALSE
418 chr16 51173735 51173966 232
45.16783 10478.936 7328663 7328894 178 4772 0.4838362 0.0000000 0.0000000 0.0000000 1.9353448 NaN NaN 1.000000e+100 0.0016714 TRUE 0.0805505 TRUE SALL1 NM_001127892 NM_002968 NP_001121364 NP_002959 XM_006721241 XP_006721304 inside exon inside 11217 inside exon 0 2 3 inside transcription region
14160 4818 0.65 FALSE
419 chr19 54445290 54445539 250
41.79278 10448.195 11720783 11721032 396 1943 0.5056000 0.0000000 0.0000000 0.0000000 2.0224000 NaN NaN 1.000000e+100 0.0016886 TRUE 0.0810539 TRUE CACNG7 NM_031896 NP_114102 XM_005259124 XM_005259125 XP_005259181 XP_005259182 inside exon inside 29299 inside exon 0 5 5 inside transcription region
30978 29461 0.66 FALSE
420 chr13 56153923 56154055 133
78.53720 10445.448 3925577 3925709 121 13379 0.9563910 0.0000000 0.0000000 0.0000000 3.8255639 NaN NaN 1.000000e+100 0.0016899 TRUE 0.0810539 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.66 FALSE
421 chr20 38903204 38903358 155
67.32892 10435.983 4404397 4404551 116 5560 1.4119355 0.0000000 0.0709677 0.0000000 5.5767742 1.000000e+100 NaN 1.000000e+100 0.0016954 TRUE 0.0811253 TRUE MAFB NM_005461 NP_005452 downstream downstream 414518 NA NA NA 1 NA
3359 971 0.66 FALSE
422 chr12 59718746 59718947 202
51.55629 10414.370 7620836 7621037 197 6694 1.0264851 0.0000000 0.0000000 0.0000000 4.1059406 NaN NaN 1.000000e+100 0.0017087 TRUE 0.0815680 TRUE SLC16A7 NM_001270622 NM_001270623 NM_004731 NP_001257551 NP_001257552 NP_004722 NR_073055 NR_073056 XM_005269231 XM_006719693 XP_005269288 XP_006719756 upstream upstream 270874 NA NA NA 6 NA
193814 74877 0.66 FALSE
423 chr7 83094324 83094479 156
66.62527 10393.542 8282879 8283034 218 5588 1.6435897 0.0000000 0.0000000 0.0000000 6.5743590 NaN NaN 1.000000e+100 0.0017196 TRUE 0.0815922 TRUE SEMA3E NM_001178129 NM_012431 NP_001171600 NP_036563 XM_006716187 XP_006716250 inside intron inside 184000 inside intron -1319 4 17 inside transcription region
285257 280956 0.66 FALSE
424 chr9 99981587 99981771 185
56.16582 10390.676 6936029 6936213 238 7264 1.0443243 0.0000000 0.6659459 0.0529730 3.4583784 1.000000e+100 1.000000e+100 1.000000e+100 0.0017214 TRUE 0.0815922 TRUE LOC100499484 NR_036526 NA NA 0 NA NA NA 16 NA
0 0 0.66 FALSE
425 chr4 183721801 183721989 189
54.93701 10383.095 12325302 12325490 478 8341 0.6605820 0.0000000 0.0000000 0.0000000 2.6423280 NaN NaN 1.000000e+100 0.0017252 TRUE 0.0815922 TRUE TENM3 NM_001080477 NP_001073946 XM_006714256 XM_006714257 XM_006714258 XP_006714319 XP_006714320 XP_006714321 inside exon inside 476702 inside exon 0 27 27 3'UTR
479078 476330 0.66 FALSE
426 chr2 241685155 241685326 172
60.36456 10382.705 23645417 23645588 635 9104 0.6037791 0.0000000 0.0000000 0.0000000 2.4151163 NaN NaN 1.000000e+100 0.0017254 TRUE 0.0815922 TRUE KIF1A NM_001244008 NM_004321 NP_001230937 NP_004312 XM_005247022 XM_005247023 XM_005247024 XM_005247026 XM_005247027 XM_005247028 XM_006712601 XM_006712602 XM_006712603 XM_006712604 XM_006712605 XP_005247079 XP_005247080 XP_005247081 XP_005247083 XP_005247084 XP_005247085 XP_006712664 XP_006712665 XP_006712666 XP_006712667 XP_006712668 inside exon inside 74399 inside exon 0 31 43 inside transcription region
96895 74339 0.66 FALSE
427 chr12 7942037 7942154 118
87.87290 10369.002 1191156 1191273 42 325 1.3703390 0.0593220 0.0830508 0.2288136 5.1101695 4.854268e-01 1.947533e+00 6.428659e+00 0.0017329 TRUE 0.0816233 TRUE NANOG NM_024865 NP_079141 XM_005253484 XP_005253541 inside exon inside 42 inside exon 0 1 4 5' UTR
6660 5480 0.66 FALSE
428 chr20 31387959 31388104 146
71.01235 10367.804 2807852 2807997 85 24597 3.8212329 1.7369863 1.8684932 1.1575342 10.5219178 1.052889e-01 -5.855315e-01 2.598739e+00 0.0017342 TRUE 0.0816233 TRUE DNMT3B NM_001207055 NM_001207056 NM_006892 NM_175848 NM_175849 NM_175850 NP_001193984 NP_001193985 NP_008823 NP_787044 NP_787045 NP_787046 inside exon inside 8552 inside exon 0 10 14 inside transcription region
17755 16212 0.66 FALSE
429 chr9 121253334 121253450 117
88.49919 10354.405 8707992 8708108 300 4272 2.0572650 0.0000000 0.0000000 0.0000000 8.2290598 NaN NaN 1.000000e+100 0.0017431 TRUE 0.0817297 TRUE BRINP1 NM_014618 NP_055433 downstream downstream 878289 NA NA NA 8 NA
202831 146271 0.66 FALSE
430 chr1 62675574 62675850 277
37.36241 10349.388 10231825 10232101 267 17384 6.8481949 2.1862816 4.4194946 2.6180505 18.1689531 1.015402e+00 2.600137e-01 3.054924e+00 0.0017458 TRUE 0.0817297 TRUE L1TD1 NM_001164835 NM_019079 NP_001158307 NP_061952 inside exon inside 15100 inside exon 0 5 5 inside transcription region
17527 4743 0.66 FALSE
431 chr12 8948468 8948616 149
69.35344 10333.662 1368238 1368386 52 8328 0.9228188 0.0000000 0.0000000 0.0000000 3.6912752 NaN NaN 1.000000e+100 0.0017557 TRUE 0.0817297 TRUE RIMKLB NM_020734 NP_065785 XM_006719116 XM_006719117 XM_006719118 XM_006719119 XM_006719120 XM_006719121 XM_006719122 XM_006719123 XM_006719124 XM_006719125 XM_006719126 XM_006719127 XM_006719128 XP_006719179 XP_006719180 XP_006719181 XP_006719182 XP_006719183 XP_006719184 XP_006719185 XP_006719186 XP_006719187 XP_006719188 XP_006719189 XP_006719190 XP_006719191 NA NA 0 NA NA NA 9 NA
0 0 0.66 FALSE
432 chrX 29995973 29996073 101
102.30117 10332.418 2040408 2040508 80 101 1.0777228 0.0000000 0.0000000 0.0000000 4.3108911 NaN NaN 1.000000e+100 0.0017564 TRUE 0.0817297 TRUE IL1RAPL1 NM_014271 NP_055086 XM_005274441 XP_005274498 downstream downstream 1390292 NA NA NA 11 NA
1368336 1166476 0.66 FALSE
433 chr1 6305260 6305418 159
64.97825 10331.541 924353 924511 30 1346 0.4918239 0.0000000 0.0000000 0.0000000 1.9672956 NaN NaN 1.000000e+100 0.0017569 TRUE 0.0817297 TRUE HES3 NM_001024598 NP_001019769 inside exon inside 1008 inside exon 0 4 4 inside transcription region
1386 1141 0.66 FALSE
434 chr3 65340344 65340503 160
64.52732 10324.372 7962071 7962230 214 3821 0.5381250 0.0012500 0.0000000 0.0000000 2.1512500 -1.000000e+100 -1.000000e+100 1.074903e+01 0.0017608 TRUE 0.0817297 TRUE MAGI1 NM_001033057 NM_004742 NM_015520 NP_001028229 NP_004733 NP_056335 XM_005265563 XM_005265564 XM_005265565 XM_005265566 XM_005265568 XM_005265570 XM_005265571 XM_005265574 XM_006713407 XM_006713408 XM_006713409 XM_006713410 XM_006713411 XM_006713412 XM_006713413 XM_006713414 XP_005265620 XP_005265621 XP_005265622 XP_005265623 XP_005265625 XP_005265627 XP_005265628 XP_005265631 XP_006713470 XP_006713471 XP_006713472 XP_006713473 XP_006713474 XP_006713475 XP_006713476 XP_006713477 inside exon inside 684006 inside exon 0 23 23 3'UTR
684603 681930 0.66 FALSE
435 chr13 53307354 53307494 141
73.11638 10309.410 3909156 3909296 107 141 1.1879433 0.0000000 0.1829787 0.0000000 4.5687943 1.000000e+100 NaN 1.000000e+100 0.0017682 TRUE 0.0818874 TRUE LECT1 NM_001011705 NM_007015 NP_001011705 NP_008946 XM_006719760 XM_006719761 XP_006719823 XP_006719824 inside exon inside 6453 inside exon 0 3 6 inside transcription region
36547 36187 0.66 FALSE
436 chr10 53794232 53794387 156
66.00248 10296.386 5589483 5589638 138 5761 5.5849359 0.0961538 0.2512821 0.1974359 21.7948718 1.385891e+00 1.037968e+00 7.824428e+00 0.0017750 TRUE 0.0820143 TRUE PRKG1 NM_001098512 NM_006258 NP_001091982 NP_006249 XM_005269970 XM_005269971 XM_005269972 XP_005270027 XP_005270028 XP_005270029 inside intron inside 959998 inside intron 19857 6 18 inside transcription region
1223876 1219309 0.66 FALSE
437 chr16 65266378 65266543 166
61.84592 10266.423 8196834 8196999 214 5478 0.5385542 0.0000000 0.0000000 0.0000000 2.1542169 NaN NaN 1.000000e+100 0.0017934 TRUE 0.0826717 TRUE LINC00922 NM_001101346 NR_027755 NA NA 0 NA NA NA 6 NA
0 0 0.66 FALSE
438 chr3 109047969 109048200 232
44.19498 10253.235 10143872 10144103 311 11345 1.0782328 0.0870690 0.5931034 0.0913793 3.5413793 2.768053e+00 6.970900e-02 5.346009e+00 0.0018031 TRUE 0.0828459 TRUE DPPA4 NM_018189 NP_060659 inside intron inside 8219 inside intron 41 5 6 inside transcription region
11431 8594 0.66 FALSE
439 chr16 65266239 65266375 137
74.80627 10248.459 8196697 8196833 214 5478 0.6021898 0.0000000 0.0000000 0.0000000 2.4087591 NaN NaN 1.000000e+100 0.0018054 TRUE 0.0828459 TRUE LINC00922 NM_001101346 NR_027755 NA NA 0 NA NA NA 6 NA
0 0 0.66 FALSE
440 chr3 78373033 78373178 146
69.96685 10215.160 9029527 9029672 256 2419 1.4633562 0.3575342 0.0000000 0.0000000 5.4958904 -1.000000e+100 -1.000000e+100 3.942200e+00 0.0018278 TRUE 0.0836825 TRUE ROBO1 NM_001145845 NM_002941 NM_133631 NP_001139317 NP_002932 NP_598334 XM_006713276 XM_006713277 XM_006713278 XP_006713339 XP_006713340 XP_006713341 downstream downstream 364744 NA NA NA 23 NA
91534 60790 0.66 FALSE
441 chr1 114524494 114524661 168
60.73377 10203.273 15141244 15141411 417 1807 0.9767857 0.2702381 0.2833333 0.2059524 3.1476190 6.826930e-02 -3.919203e-01 3.541958e+00 0.0018362 TRUE 0.0838756 TRUE OLFML3 NM_001286352 NM_001286353 NM_020190 NP_001273281 NP_001273282 NP_064575 XM_006710778 XP_006710841 inside exon inside 2464 inside exon 0 2 2 3'UTR
2846 788 0.66 FALSE
442 chr13 110802399 110802635 237
43.00039 10191.093 5744250 5744486 212 1296 1.2103376 1.1518987 0.5721519 0.2185654 2.8987342 -1.009544e+00 -2.397877e+00 1.331409e+00 0.0018438 TRUE 0.0838756 TRUE COL4A1 NM_001845 NP_001836 inside exon inside 156861 inside exon 0 52 52 3'UTR
158186 156664 0.67 FALSE
443 chrX 86941110 86941277 168
60.65369 10189.820 5940401 5940568 237 2994 1.0657738 0.0583333 0.3166667 0.0428571 3.8452381 2.440573e+00 -4.447848e-01 6.042609e+00 0.0018445 TRUE 0.0838756 TRUE KLHL4 NM_019117 NM_057162 NP_061990 NP_476503 downstream downstream 168395 NA NA NA 11 NA
152335 148637 0.67 FALSE
444 chr8 72590866 72590966 101
100.78528 10179.314 5587272 5587372 200 5384 0.6143564 0.0000000 0.0000000 0.0000000 2.4574257 NaN NaN 1.000000e+100 0.0018521 TRUE 0.0840326 TRUE MSC NM_005098 NP_005089 downstream downstream 165765 NA NA NA 2 NA
2954 1517 0.68 FALSE
445 chr4 5822515 5822748 234
43.41234 10158.488 1191460 1191693 32 262 2.0995726 1.1222222 0.7487179 0.8487179 5.6786325 -5.838641e-01 -4.030013e-01 2.339185e+00 0.0018657 TRUE 0.0844606 TRUE EVC NM_014556 NM_153717 NP_714928 XM_005247952 XM_006713865 XM_006713866 XM_006713867 XP_005248009 XP_006713928 XP_006713929 XP_006713930 XR_427471 XR_427472 XR_427473 XR_427474 XR_427475 XR_427476 XR_427477 NA NA 0 NA NA NA 24 NA
0 0 0.69 FALSE
446 chr16 51172900 51173017 118
85.85942 10131.412 7328257 7328374 178 4772 0.6360169 0.0000000 0.0000000 0.0000000 2.5440678 NaN NaN 1.000000e+100 0.0018819 TRUE 0.0846715 TRUE SALL1 NM_001127892 NM_002968 NP_001121364 NP_002959 XM_006721241 XP_006721304 inside exon inside 12166 inside exon 0 2 3 inside transcription region
14160 4818 0.69 FALSE
447 chr16 9760985 9761084 100
101.20896 10120.896 1950655 1950754 53 7029 0.4670000 0.0000000 0.0000000 0.0000000 1.8680000 NaN NaN 1.000000e+100 0.0018883 TRUE 0.0846715 TRUE GRIN2A NM_000833 NM_001134407 NM_001134408 NP_000824 NP_001127879 NP_001127880 XM_005255267 XM_005255268 XP_005255324 XP_005255325 downstream downstream 515179 NA NA NA 13 NA
428998 417262 0.69 FALSE
448 chr13 96238297 96238390 94
107.49639 10104.661 4921004 4921097 174 6061 0.6292553 0.0000000 0.0000000 0.0000000 2.5170213 NaN NaN 1.000000e+100 0.0018996 TRUE 0.0846715 TRUE DZIP1 NM_014934 NM_198968 NP_055749 NP_945319 XM_005254032 XM_006719916 XM_006719917 XM_006719918 XM_006719919 XM_006719920 XM_006719921 XP_005254089 XP_006719979 XP_006719980 XP_006719981 XP_006719982 XP_006719983 XP_006719984 inside exon inside 58570 inside exon 0 20 22 inside transcription region
66504 59795 0.69 FALSE
449 chr15 78633385 78633563 179
56.44260 10103.226 7976412 7976590 232 3177 1.0790503 0.0000000 0.0000000 0.0000000 4.3162011 NaN NaN 1.000000e+100 0.0019006 TRUE 0.0846715 TRUE CRABP1 NM_004378 NP_004369 inside exon inside 719 inside exon 0 2 4 inside transcription region
7906 7548 0.69 FALSE
450 chr2 237074211 237074398 188
53.73981 10103.084 23176210 23176397 622 860 0.3880319 0.0000000 0.0000000 0.0000000 1.5521277 NaN NaN 1.000000e+100 0.0019006 TRUE 0.0846715 TRUE GBX2 NM_001485 NP_001476 XM_005246071 XP_005246128 overlaps 3' overlaps 3' 2254 inside exon 0 3 3 3'UTR
2345 1612 0.69 FALSE
451 chr2 27171656 27171898 243
41.55858 10098.734 2271117 2271359 64 5028 0.4956790 0.0000000 0.0000000 0.0000000 1.9827160 NaN NaN 1.000000e+100 0.0019029 TRUE 0.0846715 TRUE DPYSL5 NM_001253723 NM_001253724 NM_020134 NP_001240652 NP_001240653 NP_064519 inside exon inside 100364 inside exon 0 13 13 3'UTR
101927 48495 0.69 FALSE
452 chr5 7266287 7266379 93
108.56426 10096.476 411872 411964 14 2832 0.4338710 0.0000000 0.0000000 0.0000000 1.7354839 NaN NaN 1.000000e+100 0.0019037 TRUE 0.0846715 TRUE MIR4454 NR_039659 NA NA 0 NA NA NA 1 NA
0 0 0.69 FALSE
453 chr15 77906118 77906236 119
84.84278 10096.291 7908941 7909059 231 2856 0.6848739 0.0000000 0.0000000 0.0000000 2.7394958 NaN NaN 1.000000e+100 0.0019040 TRUE 0.0846715 TRUE LINGO1 NM_032808 NP_116197 XM_006720723 XP_006720786 inside exon inside 82239 inside exon 0 4 4 3'UTR
83106 1844 0.69 FALSE
454 chr17 47129098 47129268 171
58.89830 10071.610 9733884 9734054 231 18864 0.7078947 0.0000000 0.0000000 0.0000000 2.8315789 NaN NaN 1.000000e+100 0.0019206 TRUE 0.0852042 TRUE IGF2BP1 NM_001160423 NM_006546 NP_001153895 NP_006537 XM_005256955 XP_005257012 inside exon inside 54324 inside exon 0 13 13 3'UTR
58733 51698 0.69 FALSE
455 chr8 9760344 9760432 89
113.10754 10066.571 608741 608829 19 2431 0.4786517 0.0000000 0.0000000 0.0000000 1.9146067 NaN NaN 1.000000e+100 0.0019244 TRUE 0.0852042 TRUE LINC00599 NR_024281 NA NA 0 NA NA NA 3 NA
0 0 0.69 FALSE
456 chr22 45939281 45939406 126
79.75466 10049.087 5802369 5802494 151 2298 1.5829365 0.1603175 0.2206349 0.3126984 5.6380952 4.607296e-01 9.638403e-01 5.136204e+00 0.0019358 TRUE 0.0854917 TRUE FBLN1 NM_001996 NM_006485 NM_006486 NM_006487 NP_001987 NP_006476 NP_006477 NP_006478 inside exon inside 40562 inside exon 0 11 17 inside transcription region
98295 97460 0.69 FALSE
457 chr9 76701613 76701778 166
60.45454 10035.453 4588730 4588895 157 6962 0.4927711 0.0000000 0.0000000 0.0000000 1.9710843 NaN NaN 1.000000e+100 0.0019452 TRUE 0.0854917 TRUE RORB NM_006914 NP_008845 upstream upstream 410474 NA NA NA 10 NA
189865 187641 0.69 FALSE
458 chr21 18941752 18941930 179
56.04554 10032.152 273492 273670 17 3751 0.8162011 0.2055866 0.0379888 0.2670391 2.7541899 -2.436099e+00 3.773049e-01 3.743810e+00 0.0019483 TRUE 0.0854917 TRUE CXADR NM_001207063 NM_001207064 NM_001207065 NM_001207066 NM_001338 NP_001193992 NP_001193993 NP_001193994 NP_001193995 NP_001329 inside intron inside 56528 inside intron -3823 7 8 inside transcription region
80673 80063 0.69 FALSE
459 chr20 38902161 38902383 223
44.97933 10030.391 4403469 4403691 116 5560 1.7230942 0.0394619 0.0394619 0.0161435 6.7973094 0.000000e+00 -1.289507e+00 7.428360e+00 0.0019493 TRUE 0.0854917 TRUE MAFB NM_005461 NP_005452 downstream downstream 415493 NA NA NA 1 NA
3359 971 0.69 FALSE
460 chr11 83108133 83108233 101
99.22782 10022.010 9794343 9794443 291 101 0.8143564 0.1069307 0.0396040 0.0000000 3.1108911 -1.432959e+00 -1.000000e+100 4.862580e+00 0.0019549 TRUE 0.0854917 TRUE DLG2 NM_001142699 NM_001142700 NM_001142702 NM_001206769 NM_001364 NP_001136171 NP_001136172 NP_001136174 NP_001193698 NP_001355 XM_005273805 XM_005273806 XM_005273807 XM_005273809 XM_005273810 XM_005273811 XM_006718438 XM_006718439 XM_006718440 XP_005273862 XP_005273863 XP_005273864 XP_005273866 XP_005273867 XP_005273868 XP_006718501 XP_006718502 XP_006718503 downstream downstream 285235 NA NA NA 11 NA
227412 173463 0.69 FALSE
461 chr1 82456075 82456254 180
55.66019 10018.835 11404955 11405134 322 1848 0.8138889 0.0000000 0.0000000 0.0000000 3.2555556 NaN NaN 1.000000e+100 0.0019564 TRUE 0.0854917 TRUE LPHN2 NM_012302 NP_036434 XM_005270666 XM_005270667 XM_005270668 XM_005270670 XM_005270673 XM_005270674 XM_006710485 XM_006710486 XM_006710487 XM_006710488 XM_006710489 XM_006710490 XM_006710491 XM_006710492 XM_006710493 XM_006710494 XM_006710495 XM_006710496 XM_006710497 XP_005270723 XP_005270724 XP_005270725 XP_005270727 XP_005270730 XP_005270731 XP_006710548 XP_006710549 XP_006710550 XP_006710551 XP_006710552 XP_006710553 XP_006710554 XP_006710555 XP_006710556 XP_006710557 XP_006710558 XP_006710559 XP_006710560 inside exon inside 40202 inside exon 0 17 17 inside transcription region
42234 40867 0.69 FALSE
462 chr14 22005030 22005130 101
99.07812 10006.891 322723 322823 22 2586 0.5792079 0.0000000 0.0000000 0.0158416 2.3009901 NaN 1.000000e+100 1.000000e+100 0.0019650 TRUE 0.0856447 TRUE SALL2 NM_005407 NP_005398 XM_005267983 XP_005268040 inside exon inside 207 inside exon 0 1 4 overlaps 5' UTR
15864 14913 0.70 FALSE
463 chr16 65264400 65264601 202
49.51640 10002.313 8195168 8195369 214 5478 0.8430693 0.0089109 0.0217822 0.0257426 3.3158416 1.289507e+00 1.530515e+00 8.539590e+00 0.0019684 TRUE 0.0856447 TRUE LINC00922 NM_001101346 NR_027755 NA NA 0 NA NA NA 6 NA
0 0 0.70 FALSE
464 chr9 124558856 124558991 136
73.41917 9985.007 9066783 9066918 316 483 0.8213235 0.0000000 0.1485294 0.0000000 3.1367647 1.000000e+100 NaN 1.000000e+100 0.0019786 TRUE 0.0859038 TRUE DAB2IP NM_032552 NM_138709 NP_115941 NP_619723 XM_005251719 XM_005251720 XM_005251721 XM_005251722 XM_005251723 XM_005251724 XM_005251725 XM_006716961 XM_006716962 XP_005251776 XP_005251777 XP_005251778 XP_005251779 XP_005251780 XP_005251781 XP_005251782 XP_006717024 XP_006717025 downstream downstream 229457 NA NA NA 17 NA
218410 216356 0.70 FALSE
465 chr17 42882181 42882372 192
51.93732 9971.965 8249029 8249220 204 7091 0.6260417 0.2072917 0.0000000 0.0000000 2.2968750 -1.000000e+100 -1.000000e+100 3.469938e+00 0.0019877 TRUE 0.0861126 TRUE GJC1 NM_001080383 NM_005497 NP_001073852 NP_005488 XM_005256920 XM_005256921 XP_005256977 XP_005256978 inside exon inside 25807 inside exon 0 3 3 inside transcription region
32363 1190 0.70 FALSE
466 chr7 156685703 156685770 68
146.35663 9952.251 16523526 16523593 453 77 12.2485294 39.2941176 6.2617647 2.7764706 0.6617647 -2.649672e+00 -3.822989e+00 -5.891851e+00 0.0020008 TRUE 0.0864959 TRUE LMBR1 NM_022458 NP_071903 XM_005249555 XM_005249556 XM_005249558 XM_005249559 XP_005249612 XP_005249613 XP_005249615 XP_005249616 XR_428184 XR_428185 inside exon inside 132 inside exon 0 1 15 5' UTR
212332 208925 0.70 FALSE
467 chr1 62696349 62696450 102
97.38546 9933.317 10234282 10234383 268 5146 0.5524510 0.0000000 0.0000000 0.0000000 2.2098039 NaN NaN 1.000000e+100 0.0020135 TRUE 0.0868565 TRUE KANK4 NM_181712 NP_859063 downstream downstream 32646 NA NA NA 4 NA
27259 14885 0.70 FALSE
468 chr2 241653192 241653345 154
64.45807 9926.543 23640111 23640264 634 13166 0.8000000 0.0259740 0.0000000 0.0000000 3.1740260 -1.000000e+100 -1.000000e+100 6.933101e+00 0.0020179 TRUE 0.0868594 TRUE KIF1A NM_001244008 NM_004321 NP_001230937 NP_004312 XM_005247022 XM_005247023 XM_005247024 XM_005247026 XM_005247027 XM_005247028 XM_006712601 XM_006712602 XM_006712603 XM_006712604 XM_006712605 XP_005247079 XP_005247080 XP_005247081 XP_005247083 XP_005247084 XP_005247085 XP_006712664 XP_006712665 XP_006712666 XP_006712667 XP_006712668 inside exon inside 106380 inside exon 0 49 49 3'UTR
106544 80388 0.70 FALSE
469 chr11 3432862 3432998 137
72.27772 9902.048 720472 720608 13 10349 0.8985401 0.0000000 0.0000000 0.0000000 3.5941606 NaN NaN 1.000000e+100 0.0020323 TRUE 0.0872943 TRUE LOC650368 NR_024248 NA NA 0 NA NA NA 9 NA
0 0 0.70 FALSE
470 chr2 193000335 193000454 120
82.43569 9892.283 18581135 18581254 499 120 2.8979167 0.0000000 0.0000000 0.1683333 11.4233333 NaN 1.000000e+100 1.000000e+100 0.0020396 TRUE 0.0874215 TRUE TMEFF2 NM_016192 NP_057276 XM_005246437 XP_005246494 inside intron inside 59190 inside intron -43940 4 10 inside transcription region
244897 244213 0.70 FALSE
471 chr1 6306352 6306458 107
92.29174 9875.216 924540 924646 30 1346 0.6000000 0.0000000 0.0000000 0.0000000 2.4000000 NaN NaN 1.000000e+100 0.0020524 TRUE 0.0875924 TRUE HES3 NM_001024598 NP_001019769 close to 3' close to 3' 2100 NA NA NA 4 NA
1386 1141 0.71 FALSE
472 chr1 158068293 158068491 199
49.61405 9873.196 20093347 20093545 545 6758 0.4572864 0.1989950 0.0000000 0.0000000 1.6301508 -1.000000e+100 -1.000000e+100 3.034201e+00 0.0020531 TRUE 0.0875924 TRUE KIRREL NM_001286349 NM_018240 NP_001273278 NP_060710 XM_005245305 XM_005245306 XM_006711430 XP_005245362 XP_005245363 XP_006711493 downstream downstream 105230 NA NA NA 15 NA
102781 101443 0.71 FALSE
473 chr4 79462972 79463128 157
62.87832 9871.896 5857884 5858040 207 3243 0.6917197 0.0000000 0.1872611 0.2114650 2.3681529 1.000000e+100 1.000000e+100 1.000000e+100 0.0020566 TRUE 0.0875924 TRUE FRAS1 NM_001166133 NM_020875 NM_025074 NM_032863 NM_206841 NP_001159605 NP_079350 XM_006714314 XM_006714315 XM_006714316 XM_006714317 XP_006714377 XP_006714378 XP_006714379 XP_006714380 inside exon inside 484248 inside exon 0 74 74 3'UTR
486699 483114 0.71 FALSE
474 chr6 131828039 131828174 136
72.26000 9827.359 12291424 12291559 343 136 2.2977941 0.0000000 0.2617647 0.5411765 8.3882353 1.000000e+100 1.000000e+100 1.000000e+100 0.0020878 TRUE 0.0884195 TRUE ARG1 NM_000045 NM_001244438 NP_000036 NP_001231367 upstream upstream 66170 NA NA NA 7 NA
11121 10524 0.71 FALSE
475 chr20 38900421 38900550 130
75.49913 9814.887 4402171 4402300 116 5560 0.6069231 0.0000000 0.0000000 0.0000000 2.4276923 NaN NaN 1.000000e+100 0.0020943 TRUE 0.0884195 TRUE MAFB NM_005461 NP_005452 downstream downstream 417326 NA NA NA 1 NA
3359 971 0.71 FALSE
476 chr7 13933064 13933284 221
44.39781 9811.916 1615368 1615588 37 4281 0.8846154 0.4081448 0.1828054 0.0000000 2.9475113 -1.158772e+00 -1.000000e+100 2.852344e+00 0.0020957 TRUE 0.0884195 TRUE ETV1 NM_001163147 NM_001163148 NM_001163149 NM_001163150 NM_001163151 NM_001163152 NM_004956 NP_001156619 NP_001156620 NP_001156621 NP_001156622 NP_001156623 NP_001156624 NP_004947 XM_005249635 XM_005249636 XP_005249692 XP_005249693 inside exon inside 97766 inside exon 0 13 13 3'UTR
100194 82539 0.71 FALSE
477 chr4 93365600 93365700 101
97.13011 9810.141 7117134 7117234 250 6141 0.6188119 0.0000000 0.0000000 0.0000000 2.4752475 NaN NaN 1.000000e+100 0.0020967 TRUE 0.0884195 TRUE GRID2 NM_001286838 NM_001510 NP_001273767 NP_001501 XM_006714195 XP_006714258 inside intron inside 140050 inside intron -139705 1 15 inside transcription region
1468099 1467841 0.71 FALSE
478 chr1 13942400 13942520 121
81.04175 9806.051 2304219 2304339 59 3939 0.6838843 0.3867769 0.0000000 0.0000000 2.3487603 -1.000000e+100 -1.000000e+100 2.602326e+00 0.0020980 TRUE 0.0884195 TRUE PDPN NM_001006624 NM_001006625 NM_006474 NM_198389 NP_001006625 NP_001006626 NP_006465 NP_938203 XM_006710295 XP_006710358 inside exon inside 30433 inside exon 0 6 6 overlaps 3'UTR
32485 8679 0.71 FALSE
479 chr5 141692045 141692145 101
97.02620 9799.646 12325387 12325487 384 14439 0.4400990 0.0000000 0.0000000 0.0000000 1.7603960 NaN NaN 1.000000e+100 0.0021047 TRUE 0.0885146 TRUE SPRY4 NM_001127496 NM_030964 NP_001120968 NP_112226 XM_005268518 XM_005268519 XM_006714798 XP_005268575 XP_005268576 XP_006714861 inside exon inside 12475 inside exon 0 3 3 3'UTR
14628 5556 0.71 FALSE
480 chr16 51173356 51173479 124
78.78012 9768.734 7328509 7328632 178 4772 0.5338710 0.0000000 0.0000000 0.0000000 2.1354839 NaN NaN 1.000000e+100 0.0021280 TRUE 0.0891384 TRUE SALL1 NM_001127892 NM_002968 NP_001121364 NP_002959 XM_006721241 XP_006721304 inside exon inside 11704 inside exon 0 2 3 inside transcription region
14160 4818 0.72 FALSE
481 chr15 65622064 65622202 139
70.27527 9768.262 5965180 5965318 184 8664 0.9291367 0.0071942 0.0000000 0.0000000 3.7093525 -1.000000e+100 -1.000000e+100 9.010108e+00 0.0021283 TRUE 0.0891384 TRUE IGDCC3 NM_004884 NP_004875 inside exon inside 26508 inside exon 0 11 12 inside transcription region
26982 6564 0.72 FALSE
482 chr7 83090034 83090139 106
91.81007 9731.868 8279583 8279688 218 5588 0.6688679 0.0000000 0.0000000 0.0000000 2.6754717 NaN NaN 1.000000e+100 0.0021563 TRUE 0.0901196 TRUE SEMA3E NM_001178129 NM_012431 NP_001171600 NP_036563 XM_006716187 XP_006716250 inside intron inside 188340 inside intron -5659 4 17 inside transcription region
285257 280956 0.72 FALSE
483 chr14 77598476 77598592 117
82.89532 9698.753 7117113 7117229 221 2474 0.6170940 0.0000000 0.0000000 0.0000000 2.4683761 NaN NaN 1.000000e+100 0.0021827 TRUE 0.0909085 TRUE ZDHHC22 NM_174976 NP_777636 XM_006720119 XM_006720120 XP_006720182 XP_006720183 inside exon inside 9542 inside exon 0 3 3 3'UTR
10521 6055 0.72 FALSE
484 chrX 113836089 113836246 158
61.37717 9697.593 6944417 6944574 300 5470 3.6591772 0.7670886 1.2784810 1.4063291 11.1848101 7.369656e-01 8.744691e-01 3.866004e+00 0.0021842 TRUE 0.0909085 TRUE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 inside intron inside 17538 inside intron 12027 2 7 5' UTR
326073 180632 0.72 FALSE
485 chr15 65622631 65622735 105
92.03202 9663.362 5965319 5965423 184 8664 0.9038095 0.0000000 0.0000000 0.0000000 3.6152381 NaN NaN 1.000000e+100 0.0022108 TRUE 0.0918261 TRUE IGDCC3 NM_004884 NP_004875 inside exon inside 25975 inside exon 0 10 12 inside transcription region
26982 6564 0.72 FALSE
486 chr8 30242222 30242387 166
58.00262 9628.435 2684413 2684578 80 656 0.7948795 0.0939759 0.1180723 0.1361446 2.8313253 3.293076e-01 5.347767e-01 4.913043e+00 0.0022327 TRUE 0.0925449 TRUE RBPMS NM_001008710 NM_001008711 NM_001008712 NM_006867 NP_001008710 NP_001008711 NP_001008712 NP_006858 XM_005273386 XM_005273390 XM_006716277 XM_006716278 XM_006716279 XP_005273443 XP_005273447 XP_006716340 XP_006716341 XP_006716342 XR_428303 XR_428304 XR_428305 inside exon inside 278 inside exon 0 1 9 5' UTR
187790 173857 0.72 FALSE
487 chr4 93542615 93542715 101
95.16360 9611.524 7119186 7119286 253 1605 0.5212871 0.0000000 0.0000000 0.0000000 2.0851485 NaN NaN 1.000000e+100 0.0022442 TRUE 0.0928313 TRUE GRID2 NM_001286838 NM_001510 NP_001273767 NP_001501 XM_006714195 XP_006714258 inside intron inside 317065 inside intron -31178 2 15 inside transcription region
1468099 1467841 0.72 FALSE
488 chr13 56156848 56157013 166
57.85711 9604.280 3927430 3927595 121 13379 0.8132530 0.0000000 0.0000000 0.0000000 3.2530120 NaN NaN 1.000000e+100 0.0022498 TRUE 0.0928754 TRUE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.73 FALSE
489 chr4 180090213 180090347 135
71.00091 9585.122 12309507 12309641 468 3689 1.2514815 0.1007407 0.1925926 0.0000000 4.7125926 9.349050e-01 -1.000000e+100 5.547802e+00 0.0022646 TRUE 0.0931165 TRUE LINC01098 NM_001085490 NR_028342 NA NA 0 NA NA NA 6 NA
0 0 0.73 FALSE
490 chr22 31531000 31531100 101
94.89712 9584.609 2713910 2714010 72 5042 0.5054455 0.0000000 0.0000000 0.0000000 2.0217822 NaN NaN 1.000000e+100 0.0022649 TRUE 0.0931165 TRUE PLA2G3 NM_015715 NP_056530 inside exon inside 5369 inside exon 0 7 7 3'UTR
5676 4631 0.73 FALSE
491 chr1 16112792 16113003 212
45.14585 9570.920 2508882 2509093 69 1865 0.8985849 0.4745283 0.1943396 0.2113208 2.7141509 -1.287914e+00 -1.167060e+00 2.515935e+00 0.0022771 TRUE 0.0934261 TRUE FBLIM1 NM_001024215 NM_001024216 NM_017556 NP_001019386 NP_001019387 NP_060026 XM_005245900 XM_005245901 XM_005245902 XM_005245903 XM_005245904 XM_005245908 XM_005245909 XM_005245910 XM_005245911 XM_006710704 XM_006710705 XP_005245957 XP_005245958 XP_005245959 XP_005245960 XP_005245961 XP_005245965 XP_005245966 XP_005245967 XP_005245968 XP_006710767 XP_006710768 inside exon inside 21333 inside exon 0 5 5 3'UTR
21625 19677 0.73 FALSE
492 chrX 136653429 136653529 101
94.48578 9543.064 8316826 8316926 368 1802 0.5049505 0.0000000 0.0000000 0.0000000 2.0198020 NaN NaN 1.000000e+100 0.0022998 TRUE 0.0940143 TRUE ZIC3 NM_003413 NP_003404 inside exon inside 5083 inside exon 0 3 3 3'UTR
5913 3378 0.73 FALSE
493 chr16 51170377 51170627 251
37.97442 9531.580 7327453 7327703 178 4772 0.7262948 0.0000000 0.0000000 0.0000000 2.9051793 NaN NaN 1.000000e+100 0.0023100 TRUE 0.0940143 TRUE SALL1 NM_001127892 NM_002968 NP_001121364 NP_002959 XM_006721241 XP_006721304 inside exon inside 14556 inside exon 0 3 3 3'UTR
15297 13764 0.73 FALSE
494 chr7 136912591 136912822 232
41.06983 9528.201 13939736 13939967 384 720 1.2452586 0.1379310 0.2137931 0.0000000 4.6293103 6.322682e-01 -1.000000e+100 5.068778e+00 0.0023128 TRUE 0.0940143 TRUE PTN NM_002825 NP_002816 XM_005250515 XM_005250516 XP_005250572 XP_005250573 inside exon inside 115724 inside exon 0 5 5 overlaps 3'UTR
116454 26953 0.73 FALSE
495 chr8 15517016 15517156 141
67.53429 9522.335 1075373 1075513 31 2790 1.1358156 0.7716312 0.0000000 0.0000000 3.7716312 -1.000000e+100 -1.000000e+100 2.289205e+00 0.0023162 TRUE 0.0940143 TRUE TUSC3 NM_006765 NM_178234 NP_006756 NP_839952 XM_005273646 XM_005273647 XM_005273648 XP_005273703 XP_005273704 XP_005273705 inside exon inside 119420 inside exon 0 4 10 inside transcription region
226562 223787 0.73 FALSE
496 chrX 121375487 121375583 97
98.15380 9520.918 7508209 7508305 321 3521 0.4778351 0.0000000 0.0000000 0.0000000 1.9113402 NaN NaN 1.000000e+100 0.0023177 TRUE 0.0940143 TRUE GRIA3 NM_000828 NM_001256743 NM_007325 NM_181894 NP_000819 NP_001243672 NP_015564 upstream upstream 942513 NA NA NA 5 NA
20437 19882 0.73 FALSE
497 chr2 67563150 67563343 194
49.06549 9518.706 7343573 7343766 170 8050 1.1793814 0.0546392 0.2061856 0.0000000 4.4567010 1.915936e+00 -1.000000e+100 6.349897e+00 0.0023194 TRUE 0.0940143 TRUE ETAA1 NM_019002 NP_061875 XM_005264374 XM_005264375 XM_005264376 XM_005264377 XM_005264378 XP_005264431 XP_005264432 XP_005264433 XP_005264434 XP_005264435 upstream upstream 61099 NA NA NA 6 NA
13091 12589 0.73 FALSE
498 chr11 3416872 3416972 101
93.69364 9463.058 718832 718932 12 7326 0.5247525 0.0000000 0.0000000 0.0000000 2.0990099 NaN NaN 1.000000e+100 0.0023608 TRUE 0.0954988 TRUE LOC650368 NR_024248 NA NA 0 NA NA NA 11 NA
0 0 0.74 FALSE
499 chr5 146798010 146798194 185
50.96232 9428.029 12809684 12809868 396 5986 1.2129730 0.3340541 0.2951351 0.0000000 4.2227027 -1.787059e-01 -1.000000e+100 3.660013e+00 0.0023882 TRUE 0.0964141 TRUE DPYSL3 NM_001197294 NM_001387 NP_001184223 NP_001378 inside exon inside 91425 inside exon 0 3 14 inside transcription region
119248 115823 0.74 FALSE
500 chr7 83094486 83094655 170
55.38853 9416.051 8283041 8283210 218 5588 2.2797059 0.0000000 0.0000000 0.0000000 9.1188235 NaN NaN 1.000000e+100 0.0023962 TRUE 0.0964694 TRUE SEMA3E NM_001178129 NM_012431 NP_001171600 NP_036563 XM_006716187 XP_006716250 inside intron inside 183824 inside intron -1143 4 17 inside transcription region
285257 280956 0.74 FALSE

Best region clusters

The following plots were made using ggbio (Yin, Cook, and Lawrence, 2012) which in turn uses ggplot2 (Wickham, 2009). For more details check plotCluster() in derfinder (Collado-Torres, Frazee, Jaffe, and Leek, 2014).

Plots

## Select clusters by cluster area
df <- data.frame(area = fullRegions$area,
    clusterChr = paste0(as.integer(fullRegions$cluster), 
    chr = as.character(seqnames(fullRegions))))
regionClustAreas <- tapply(df$area, df$clusterChr, sum)
bestArea <- sapply(names(head(sort(regionClustAreas, decreasing=TRUE),
    nBestClusters)), function(y) { which(df$clusterChr == y)[[1]]})

## Graphical setup: ideograms 
if(hg19 & is.null(p.ideos)) {
    ## Load ideogram info
    data(hg19IdeogramCyto, package = 'biovizBase')
    ideos.set <- as.character(unique(seqnames(fullRegions[bestArea])))
    p.ideos <- lapply(ideos.set, function(xx) { 
        plotIdeogram(hg19IdeogramCyto, mapSeqlevels(xx, 'UCSC'))
    })
    names(p.ideos) <- ideos.set
} else {
    stopifnot(!is.null(p.ideos))
}

## Graphical setup: main plotting function
regionClusterPlot <- function(idx, tUse='qval') {
    ## Chr specific selections
    chr <- as.character(seqnames(fullRegions[idx]))
    p.ideo <- p.ideos[[chr]]
    covInfo <- fullCov[[chr]]
    
    ## Make the plot
    p <- plotCluster(idx, regions = fullRegions, annotation = regions.df,
        coverageInfo = covInfo, groupInfo = optionsStats$groupInfo,
        titleUse = tUse, txdb = txdb, p.ideogram = p.ideo)
    print(p)
    rm(p.ideo, covInfo)
    
    return(invisible(TRUE))
}

Below are the best 20 region clusters ordered by cluster area (sum of the area of regions inside a cluster). The region with the highest area in the cluster is shown with a red bar.

## Genome plots
for(idx in bestArea) {
    regionClusterPlot(idx, ifelse(nullExist, ifelse(fwerExist, 'fwer', 'qval'), 'none'))
}

Permutations

Below is the information on how the samples were permutted.

Summary

## Get the permutation information
nSamples <- seq_len(length(optionsStats$groupInfo))
permuteInfo <- lapply(seeds, function(x) {
    set.seed(x)
    idx <- sample(nSamples)
    data.frame(optionsStats$groupInfo[idx])
})
permuteInfo <- cbind(data.frame(optionsStats$groupInfo), do.call(cbind, permuteInfo))
colnames(permuteInfo) <- c('original', paste0('perm', seq_len(optionsStats$nPermute)))
## The raw information
# permuteInfo

n <- names(table(permuteInfo[, 2]))
permuteDetail <- data.frame(matrix(NA, nrow=optionsStats$nPermute * length(n),
    ncol = 2 + length(n)))
permuteDetail[, 1] <- rep(seq_len(optionsStats$nPermute), each=length(n))
permuteDetail[, 2] <- rep(n, optionsStats$nPermute)
colnames(permuteDetail) <- c('permutation', 'group', as.character(n))
l <- 1
m <- 3:ncol(permuteDetail)
for(j in n) {
    k <- which(permuteInfo[, 1] == j)
    for(i in 2:(optionsStats$nPermute + 1)) {
        permuteDetail[l, m] <- table(permuteInfo[k, i])
        l <- l + 1
    }
}

## How many permutations resulted in the original grouping rearrangement
obs <- diag(length(m)) * sapply(
    permuteDetail$group[ permuteDetail$permutation == 1], function(n) {
  sum(optionsStats$groupInfo == n)
})
sameAsObs <- sapply(seq_len(length(seeds)), function(i) {
    p <- as.matrix(permuteDetail[permuteDetail$permutation == i, m])
    all((p - obs) == 0)
})

## Print the summary
summary(permuteDetail[, m])
##      0to186        186to294       294to322       322to400   
##  Min.   :0.00   Min.   :0.00   Min.   :0.00   Min.   :0.00  
##  1st Qu.:1.00   1st Qu.:1.00   1st Qu.:1.00   1st Qu.:1.00  
##  Median :1.00   Median :1.00   Median :1.00   Median :1.00  
##  Mean   :1.25   Mean   :1.25   Mean   :1.25   Mean   :1.25  
##  3rd Qu.:2.00   3rd Qu.:2.00   3rd Qu.:2.00   3rd Qu.:2.00  
##  Max.   :4.00   Max.   :4.00   Max.   :4.00   Max.   :4.00

This table shows the summary per group of how many samples were assigned to the group. It can be used for fast detection of anomalies. Also note that 0 permutations out of 100 total permutations resulted in the same grouping as in the original observed data.

Note that in derfinder the re-sampling of the samples is done without replacement. This is done to avoid singular model matrices. While the sample balance is the same across the permutations, what changes are the adjusted variables (including the column medians).

Interactive

The following table shows how the group labels were permuted. This can be useful to detect whether a permutation in particular had too many samples of a group labeled as another group, meaning that the resulting permuted group label resulted in pretty much a name change.

kable(permuteDetail, format = 'html', table.attr='id="permutation_table"')
permutation group 0to186 186to294 294to322 322to400
1 0to186 2 0 2 1
1 186to294 1 1 1 2
1 294to322 1 2 2 0
1 322to400 2 1 1 1
2 0to186 0 1 2 2
2 186to294 2 1 1 1
2 294to322 0 0 4 1
2 322to400 0 3 1 1
3 0to186 1 1 1 2
3 186to294 0 3 1 1
3 294to322 3 0 2 0
3 322to400 1 1 1 2
4 0to186 2 1 1 1
4 186to294 0 0 2 3
4 294to322 0 2 0 3
4 322to400 3 1 1 0
5 0to186 1 0 2 2
5 186to294 1 1 2 1
5 294to322 2 2 0 1
5 322to400 1 1 3 0
6 0to186 3 1 1 0
6 186to294 1 2 2 0
6 294to322 2 1 1 1
6 322to400 0 1 2 2
7 0to186 3 0 1 1
7 186to294 2 0 1 2
7 294to322 0 1 3 1
7 322to400 2 0 0 3
8 0to186 1 1 1 2
8 186to294 1 1 2 1
8 294to322 1 1 2 1
8 322to400 2 0 1 2
9 0to186 3 1 0 1
9 186to294 0 1 2 2
9 294to322 1 3 0 1
9 322to400 0 2 1 2
10 0to186 0 1 2 2
10 186to294 2 1 1 1
10 294to322 1 0 3 1
10 322to400 2 1 1 1
11 0to186 2 2 0 1
11 186to294 4 1 0 0
11 294to322 1 1 2 1
11 322to400 2 2 1 0
12 0to186 1 0 2 2
12 186to294 1 0 2 2
12 294to322 0 2 1 2
12 322to400 2 1 0 2
13 0to186 0 2 1 2
13 186to294 1 1 0 3
13 294to322 2 1 1 1
13 322to400 1 2 1 1
14 0to186 2 0 3 0
14 186to294 2 1 0 2
14 294to322 1 1 1 2
14 322to400 1 2 0 2
15 0to186 0 2 1 2
15 186to294 1 2 1 1
15 294to322 2 1 1 1
15 322to400 0 2 2 1
16 0to186 0 2 1 2
16 186to294 0 2 2 1
16 294to322 2 1 1 1
16 322to400 0 2 1 2
17 0to186 3 1 0 1
17 186to294 1 2 1 1
17 294to322 2 1 0 2
17 322to400 1 3 1 0
18 0to186 1 0 2 2
18 186to294 1 3 0 1
18 294to322 1 0 2 2
18 322to400 2 0 2 1
19 0to186 2 0 1 2
19 186to294 1 1 1 2
19 294to322 2 1 1 1
19 322to400 2 1 0 2
20 0to186 1 2 2 0
20 186to294 1 2 1 1
20 294to322 0 1 1 3
20 322to400 2 0 2 1
21 0to186 2 2 1 0
21 186to294 1 2 0 2
21 294to322 2 1 2 0
21 322to400 1 0 2 2
22 0to186 0 0 2 3
22 186to294 1 1 2 1
22 294to322 1 1 2 1
22 322to400 1 2 1 1
23 0to186 1 1 1 2
23 186to294 1 1 2 1
23 294to322 0 2 3 0
23 322to400 1 1 1 2
24 0to186 1 0 0 4
24 186to294 2 0 1 2
24 294to322 2 0 1 2
24 322to400 1 2 1 1
25 0to186 1 2 1 1
25 186to294 0 1 3 1
25 294to322 2 1 2 0
25 322to400 0 0 2 3
26 0to186 1 0 1 3
26 186to294 2 0 2 1
26 294to322 1 1 1 2
26 322to400 1 1 1 2
27 0to186 1 2 1 1
27 186to294 0 1 2 2
27 294to322 2 2 0 1
27 322to400 2 1 0 2
28 0to186 0 2 1 2
28 186to294 2 0 1 2
28 294to322 2 1 2 0
28 322to400 2 0 3 0
29 0to186 3 0 1 1
29 186to294 1 4 0 0
29 294to322 3 2 0 0
29 322to400 1 0 3 1
30 0to186 1 2 0 2
30 186to294 1 1 1 2
30 294to322 3 1 1 0
30 322to400 1 1 1 2
31 0to186 2 2 1 0
31 186to294 2 1 1 1
31 294to322 0 2 2 1
31 322to400 3 0 2 0
32 0to186 0 2 2 1
32 186to294 0 1 2 2
32 294to322 1 3 1 0
32 322to400 1 2 0 2
33 0to186 0 1 1 3
33 186to294 1 2 0 2
33 294to322 1 1 2 1
33 322to400 0 2 2 1
34 0to186 1 2 1 1
34 186to294 1 2 0 2
34 294to322 2 1 2 0
34 322to400 2 0 2 1
35 0to186 0 1 3 1
35 186to294 1 1 2 1
35 294to322 1 1 0 3
35 322to400 1 1 1 2
36 0to186 1 0 2 2
36 186to294 0 2 1 2
36 294to322 2 1 1 1
36 322to400 0 1 2 2
37 0to186 0 3 2 0
37 186to294 0 3 0 2
37 294to322 2 1 1 1
37 322to400 1 1 2 1
38 0to186 1 2 0 2
38 186to294 0 2 3 0
38 294to322 1 2 1 1
38 322to400 0 0 2 3
39 0to186 0 1 2 2
39 186to294 1 1 3 0
39 294to322 1 1 2 1
39 322to400 1 1 3 0
40 0to186 3 1 1 0
40 186to294 0 1 3 1
40 294to322 0 2 0 3
40 322to400 2 1 1 1
41 0to186 1 1 2 1
41 186to294 1 1 1 2
41 294to322 1 2 1 1
41 322to400 1 1 2 1
42 0to186 0 1 3 1
42 186to294 1 1 1 2
42 294to322 2 3 0 0
42 322to400 1 1 2 1
43 0to186 1 2 1 1
43 186to294 0 1 3 1
43 294to322 2 2 1 0
43 322to400 1 2 2 0
44 0to186 0 4 1 0
44 186to294 2 0 2 1
44 294to322 1 2 1 1
44 322to400 2 2 0 1
45 0to186 2 1 0 2
45 186to294 1 2 2 0
45 294to322 1 2 1 1
45 322to400 0 2 1 2
46 0to186 2 1 2 0
46 186to294 0 2 2 1
46 294to322 0 1 2 2
46 322to400 1 2 2 0
47 0to186 0 2 1 2
47 186to294 1 2 1 1
47 294to322 1 2 1 1
47 322to400 1 2 1 1
48 0to186 3 1 0 1
48 186to294 0 3 1 1
48 294to322 2 1 0 2
48 322to400 1 2 1 1
49 0to186 1 1 2 1
49 186to294 1 2 1 1
49 294to322 1 2 0 2
49 322to400 2 0 1 2
50 0to186 1 2 2 0
50 186to294 2 1 1 1
50 294to322 1 2 0 2
50 322to400 1 3 1 0
51 0to186 1 4 0 0
51 186to294 2 1 2 0
51 294to322 1 1 1 2
51 322to400 1 2 1 1
52 0to186 3 1 1 0
52 186to294 0 1 2 2
52 294to322 2 1 0 2
52 322to400 2 0 2 1
53 0to186 2 0 2 1
53 186to294 2 0 1 2
53 294to322 0 2 1 2
53 322to400 0 3 0 2
54 0to186 0 1 1 3
54 186to294 3 1 1 0
54 294to322 1 0 3 1
54 322to400 1 1 1 2
55 0to186 2 0 2 1
55 186to294 2 1 1 1
55 294to322 0 0 2 3
55 322to400 2 1 0 2
56 0to186 0 0 2 3
56 186to294 0 1 1 3
56 294to322 2 0 2 1
56 322to400 0 4 0 1
57 0to186 0 2 1 2
57 186to294 1 2 1 1
57 294to322 2 0 0 3
57 322to400 0 1 4 0
58 0to186 2 1 2 0
58 186to294 1 2 1 1
58 294to322 2 2 0 1
58 322to400 0 2 1 2
59 0to186 0 1 1 3
59 186to294 1 2 2 0
59 294to322 2 1 1 1
59 322to400 2 1 2 0
60 0to186 2 2 0 1
60 186to294 0 3 0 2
60 294to322 2 0 2 1
60 322to400 0 2 2 1
61 0to186 2 0 1 2
61 186to294 0 1 3 1
61 294to322 1 2 1 1
61 322to400 2 1 1 1
62 0to186 3 1 1 0
62 186to294 3 1 1 0
62 294to322 2 1 1 1
62 322to400 2 1 2 0
63 0to186 1 0 3 1
63 186to294 2 2 1 0
63 294to322 1 0 2 2
63 322to400 1 2 1 1
64 0to186 1 3 0 1
64 186to294 1 1 2 1
64 294to322 1 2 1 1
64 322to400 1 1 2 1
65 0to186 1 2 1 1
65 186to294 0 2 0 3
65 294to322 2 0 3 0
65 322to400 0 1 1 3
66 0to186 2 1 1 1
66 186to294 2 1 1 1
66 294to322 1 1 2 1
66 322to400 2 2 0 1
67 0to186 1 2 1 1
67 186to294 2 1 1 1
67 294to322 0 0 2 3
67 322to400 3 0 2 0
68 0to186 2 1 1 1
68 186to294 2 0 1 2
68 294to322 1 2 1 1
68 322to400 1 2 0 2
69 0to186 1 1 1 2
69 186to294 1 3 0 1
69 294to322 1 1 2 1
69 322to400 1 1 2 1
70 0to186 0 1 2 2
70 186to294 2 0 1 2
70 294to322 2 1 2 0
70 322to400 2 0 1 2
71 0to186 1 1 1 2
71 186to294 2 0 2 1
71 294to322 1 1 0 3
71 322to400 2 2 0 1
72 0to186 2 2 1 0
72 186to294 2 1 1 1
72 294to322 2 0 1 2
72 322to400 2 0 1 2
73 0to186 1 1 3 0
73 186to294 3 0 1 1
73 294to322 2 1 1 1
73 322to400 2 1 0 2
74 0to186 1 3 1 0
74 186to294 2 1 2 0
74 294to322 0 1 3 1
74 322to400 1 2 2 0
75 0to186 1 1 0 3
75 186to294 1 2 1 1
75 294to322 2 1 1 1
75 322to400 2 1 2 0
76 0to186 1 1 2 1
76 186to294 0 3 0 2
76 294to322 2 1 1 1
76 322to400 1 1 2 1
77 0to186 1 1 1 2
77 186to294 3 2 0 0
77 294to322 1 2 1 1
77 322to400 1 1 2 1
78 0to186 2 2 1 0
78 186to294 1 2 2 0
78 294to322 0 2 0 3
78 322to400 2 1 1 1
79 0to186 0 3 2 0
79 186to294 1 0 2 2
79 294to322 1 1 2 1
79 322to400 0 3 0 2
80 0to186 1 3 1 0
80 186to294 1 2 1 1
80 294to322 0 2 2 1
80 322to400 1 2 1 1
81 0to186 0 2 1 2
81 186to294 2 1 1 1
81 294to322 1 2 0 2
81 322to400 2 0 1 2
82 0to186 2 1 1 1
82 186to294 2 2 1 0
82 294to322 2 1 1 1
82 322to400 2 2 1 0
83 0to186 2 2 1 0
83 186to294 2 0 2 1
83 294to322 1 1 1 2
83 322to400 3 1 1 0
84 0to186 1 1 3 0
84 186to294 3 0 1 1
84 294to322 0 0 2 3
84 322to400 1 2 0 2
85 0to186 3 1 0 1
85 186to294 2 0 2 1
85 294to322 1 4 0 0
85 322to400 2 1 1 1
86 0to186 0 3 2 0
86 186to294 1 1 1 2
86 294to322 1 1 1 2
86 322to400 1 1 1 2
87 0to186 1 1 0 3
87 186to294 1 1 2 1
87 294to322 1 1 2 1
87 322to400 0 2 1 2
88 0to186 3 1 1 0
88 186to294 2 0 1 2
88 294to322 1 2 1 1
88 322to400 3 1 1 0
89 0to186 2 1 0 2
89 186to294 1 2 0 2
89 294to322 2 1 1 1
89 322to400 2 1 0 2
90 0to186 1 0 2 2
90 186to294 4 0 1 0
90 294to322 1 2 1 1
90 322to400 3 1 1 0
91 0to186 2 1 1 1
91 186to294 2 1 1 1
91 294to322 1 1 1 2
91 322to400 2 0 2 1
92 0to186 1 1 1 2
92 186to294 1 1 2 1
92 294to322 1 1 3 0
92 322to400 0 1 0 4
93 0to186 1 2 1 1
93 186to294 2 1 1 1
93 294to322 1 1 1 2
93 322to400 1 1 1 2
94 0to186 2 0 2 1
94 186to294 1 1 2 1
94 294to322 1 1 1 2
94 322to400 0 1 3 1
95 0to186 2 1 1 1
95 186to294 1 1 1 2
95 294to322 2 1 1 1
95 322to400 1 3 1 0
96 0to186 0 1 1 3
96 186to294 2 1 1 1
96 294to322 2 2 1 0
96 322to400 1 1 1 2
97 0to186 3 1 1 0
97 186to294 1 1 1 2
97 294to322 1 2 1 1
97 322to400 1 1 2 1
98 0to186 0 2 1 2
98 186to294 1 1 1 2
98 294to322 1 1 1 2
98 322to400 1 1 3 0
99 0to186 2 1 2 0
99 186to294 0 2 1 2
99 294to322 2 2 1 0
99 322to400 1 1 1 2
100 0to186 2 0 2 1
100 186to294 2 1 0 2
100 294to322 0 1 2 2
100 322to400 2 1 0 2

Reproducibility

General information

The F-statistic cutoff used was 1e-05 and type of cutoff used was theoretical. Furthermore, the maximum region (data) gap was set to and the maximum cluster gap was set to 3000.

Details

This analysis was on each chromosome was performed with the following call to analyzeChr() (shown for one chromosome only):

## analyzeChr(chr = opt$chr, coverageInfo = covData, models = models, 
##     cutoffFstat = 1e-05, nPermute = 100, seeds = seq_len(100) + 
##         20131212, groupInfo = groupInfo, lowMemDir = file.path(tempdir(), 
##         opt$chr, "chunksDir"), colsubset = colsubset, maxClusterGap = 3000, 
##     mc.cores = opt$mcores)

The results were merged using the following call to mergeResults():

## mergeResults(prefix = "run3-v1.0.10", genomicState = GenomicState.Hsapiens.UCSC.hg19.knownGene[["fullGenome"]], 
##     optionsStats = optionsStats)

This report was generated in path /dcs01/ajaffe/Brain/derRuns/derSoftware/snyder/derAnalysis using the following call to derfinderReport():

## derfinderReport(prefix = "run3-v1.0.10", browse = FALSE, nBestClusters = 20, 
##     fullCov = fullCov, device = "CairoPNG")

Date the report was generated.

## [1] "2014-11-24 17:06:42 EST"

Wallclock time spent generating the report.

## Time difference of 13.856 mins

R session information.

## Session info-----------------------------------------------------------------------------------------------------------
##  setting  value                                      
##  version  R version 3.1.1 Patched (2014-10-16 r66782)
##  system   x86_64, linux-gnu                          
##  ui       X11                                        
##  language (EN)                                       
##  collate  en_US.UTF-8                                
##  tz       
## Packages---------------------------------------------------------------------------------------------------------------
##  package                           * version  date       source                                      
##  acepack                             1.3.3.3  2013-05-03 CRAN (R 3.1.1)                              
##  AnnotationDbi                     * 1.28.1   2014-10-29 Bioconductor                                
##  base64enc                           0.1.2    2014-06-26 CRAN (R 3.1.0)                              
##  BatchJobs                           1.5      2014-10-30 CRAN (R 3.1.1)                              
##  BBmisc                              1.8      2014-10-30 CRAN (R 3.1.1)                              
##  bibtex                              0.3.6    2013-07-29 CRAN (R 3.1.1)                              
##  Biobase                           * 2.26.0   2014-10-15 Bioconductor                                
##  BiocGenerics                      * 0.12.1   2014-11-15 Bioconductor                                
##  BiocParallel                        1.0.0    2014-10-15 Bioconductor                                
##  biomaRt                             2.22.0   2014-10-15 Bioconductor                                
##  Biostrings                          2.34.0   2014-10-15 Bioconductor                                
##  biovizBase                        * 1.14.0   2014-10-15 Bioconductor                                
##  bitops                              1.0.6    2013-08-17 CRAN (R 3.1.0)                              
##  brew                                1.0.6    2011-04-13 CRAN (R 3.1.0)                              
##  BSgenome                            1.34.0   2014-10-15 Bioconductor                                
##  bumphunter                          1.6.0    2014-10-15 Bioconductor                                
##  Cairo                               1.5.6    2014-06-26 CRAN (R 3.1.0)                              
##  checkmate                           1.5.0    2014-10-19 CRAN (R 3.1.1)                              
##  cluster                             1.15.3   2014-09-04 CRAN (R 3.1.1)                              
##  codetools                           0.2.9    2014-08-21 CRAN (R 3.1.1)                              
##  colorspace                          1.2.4    2013-09-30 CRAN (R 3.1.0)                              
##  DBI                                 0.3.1    2014-09-24 CRAN (R 3.1.1)                              
##  derfinder                         * 1.0.10   2014-11-23 Bioconductor                                
##  derfinderHelper                     1.0.4    2014-11-05 Github (lcolladotor/derfinderHelper@27bcfe6)
##  derfinderPlot                       1.0.3    2014-11-05 Github (lcolladotor/derfinderPlot@8d076e3)  
##  devtools                            1.6.1    2014-10-07 CRAN (R 3.1.1)                              
##  dichromat                           2.0.0    2013-01-24 CRAN (R 3.1.0)                              
##  digest                              0.6.4    2013-12-03 CRAN (R 3.1.0)                              
##  doRNG                               1.6      2014-03-07 CRAN (R 3.1.0)                              
##  evaluate                            0.5.5    2014-04-29 CRAN (R 3.1.0)                              
##  fail                                1.2      2013-09-19 CRAN (R 3.1.0)                              
##  foreach                             1.4.2    2014-04-11 CRAN (R 3.1.0)                              
##  foreign                             0.8.61   2014-03-28 CRAN (R 3.1.1)                              
##  formatR                             1.0      2014-08-25 CRAN (R 3.1.1)                              
##  Formula                             1.1.2    2014-07-13 CRAN (R 3.1.1)                              
##  GenomeInfoDb                      * 1.2.3    2014-11-15 Bioconductor                                
##  GenomicAlignments                   1.2.1    2014-11-05 Bioconductor                                
##  GenomicFeatures                   * 1.18.2   2014-10-29 Bioconductor                                
##  GenomicFiles                        1.2.0    2014-10-15 Bioconductor                                
##  GenomicRanges                     * 1.18.3   2014-11-20 Bioconductor                                
##  GGally                              0.4.8    2014-08-26 CRAN (R 3.1.1)                              
##  ggbio                               1.14.0   2014-11-04 Bioconductor                                
##  ggplot2                           * 1.0.0    2014-05-21 CRAN (R 3.1.0)                              
##  graph                               1.44.0   2014-10-15 Bioconductor                                
##  gridExtra                         * 0.9.1    2012-08-09 CRAN (R 3.1.1)                              
##  gtable                              0.1.2    2012-12-05 CRAN (R 3.1.0)                              
##  highr                               0.4      2014-10-23 CRAN (R 3.1.1)                              
##  Hmisc                               3.14.6   2014-11-22 CRAN (R 3.1.1)                              
##  htmltools                           0.2.6    2014-09-08 CRAN (R 3.1.1)                              
##  httr                                0.5      2014-09-02 CRAN (R 3.1.1)                              
##  IRanges                           * 2.0.0    2014-10-15 Bioconductor                                
##  iterators                           1.0.7    2014-04-11 CRAN (R 3.1.0)                              
##  knitcitations                       1.0.4    2014-11-05 Github (cboettig/knitcitations@508de74)     
##  knitr                             * 1.8      2014-11-11 CRAN (R 3.1.1)                              
##  knitrBootstrap                      1.0.0    2014-11-19 Github (jimhester/knitrBootstrap@76c41f0)   
##  labeling                            0.3      2014-08-23 CRAN (R 3.1.1)                              
##  lattice                             0.20.29  2014-04-04 CRAN (R 3.1.1)                              
##  latticeExtra                        0.6.26   2013-08-15 CRAN (R 3.1.0)                              
##  locfit                              1.5.9.1  2013-04-20 CRAN (R 3.1.0)                              
##  lubridate                           1.3.3    2013-12-31 CRAN (R 3.1.1)                              
##  markdown                            0.7.4    2014-08-24 CRAN (R 3.1.1)                              
##  MASS                                7.3.35   2014-09-30 CRAN (R 3.1.1)                              
##  Matrix                              1.1.4    2014-06-15 CRAN (R 3.1.1)                              
##  matrixStats                         0.10.3   2014-10-15 CRAN (R 3.1.1)                              
##  memoise                             0.2.1    2014-04-22 CRAN (R 3.1.0)                              
##  mgcv                              * 1.8.3    2014-08-29 CRAN (R 3.1.1)                              
##  mime                                0.2      2014-09-26 CRAN (R 3.1.1)                              
##  munsell                             0.4.2    2013-07-11 CRAN (R 3.1.0)                              
##  nlme                              * 3.1.118  2014-10-07 CRAN (R 3.1.1)                              
##  nnet                                7.3.8    2014-03-28 CRAN (R 3.1.1)                              
##  OrganismDbi                         1.8.0    2014-10-15 Bioconductor                                
##  pkgmaker                            0.22     2014-05-14 CRAN (R 3.1.0)                              
##  plyr                                1.8.1    2014-02-26 CRAN (R 3.1.0)                              
##  proto                               0.3.10   2012-12-22 CRAN (R 3.1.0)                              
##  qvalue                              1.40.0   2014-10-15 Bioconductor                                
##  RBGL                                1.42.0   2014-10-15 Bioconductor                                
##  RColorBrewer                      * 1.0.5    2011-06-17 CRAN (R 3.1.0)                              
##  Rcpp                                0.11.3   2014-09-29 CRAN (R 3.1.1)                              
##  RCurl                               1.95.4.3 2014-07-29 CRAN (R 3.1.1)                              
##  RefManageR                          0.8.40   2014-10-29 CRAN (R 3.1.1)                              
##  regionReport                      * 1.0.4    2014-11-24 Github (lcolladotor/regionReport@ba61191)   
##  registry                            0.2      2012-01-24 CRAN (R 3.1.0)                              
##  reshape                             0.8.5    2014-04-23 CRAN (R 3.1.0)                              
##  reshape2                            1.4      2014-04-23 CRAN (R 3.1.0)                              
##  RJSONIO                             1.3.0    2014-07-28 CRAN (R 3.1.1)                              
##  rmarkdown                           0.3.3    2014-09-17 CRAN (R 3.1.1)                              
##  R.methodsS3                         1.6.1    2014-01-05 CRAN (R 3.1.0)                              
##  rngtools                            1.2.4    2014-03-06 CRAN (R 3.1.0)                              
##  rpart                               4.1.8    2014-03-28 CRAN (R 3.1.1)                              
##  Rsamtools                           1.18.2   2014-11-12 Bioconductor                                
##  RSQLite                             1.0.0    2014-10-25 CRAN (R 3.1.1)                              
##  rstudioapi                          0.1      2014-03-27 CRAN (R 3.1.1)                              
##  rtracklayer                         1.26.2   2014-11-12 Bioconductor                                
##  S4Vectors                         * 0.4.0    2014-10-15 Bioconductor                                
##  scales                              0.2.4    2014-04-22 CRAN (R 3.1.0)                              
##  sendmailR                           1.2.1    2014-09-21 CRAN (R 3.1.1)                              
##  stringr                             0.6.2    2012-12-06 CRAN (R 3.1.0)                              
##  survival                            2.37.7   2014-01-22 CRAN (R 3.1.1)                              
##  TxDb.Hsapiens.UCSC.hg19.knownGene * 3.0.0    2014-09-29 Bioconductor                                
##  VariantAnnotation                   1.12.4   2014-11-16 Bioconductor                                
##  XML                                 3.98.1.1 2013-06-20 CRAN (R 3.1.0)                              
##  xtable                              1.7.4    2014-09-12 CRAN (R 3.1.1)                              
##  XVector                           * 0.6.0    2014-10-15 Bioconductor                                
##  yaml                                2.1.13   2014-06-12 CRAN (R 3.1.1)                              
##  zlibbioc                            1.12.0   2014-10-15 Bioconductor

Bibliography

This report was created with regionReport (Collado-Torres, Jaffe, and Leek, 2014) using knitrBootstrap (Hester, 2014) to format the html while knitr (Xie, 2014) and rmarkdown (Allaire, McPherson, Xie, Wickham, et al., 2014) were running behind the scenes.

Citations made with knitcitations (Boettiger, 2014).

[1] J. Allaire, J. McPherson, Y. Xie, H. Wickham, et al. rmarkdown: Dynamic Documents for R. R package version 0.3.3. 2014. URL: http://CRAN.R-project.org/package=rmarkdown.

[2] C. Boettiger. knitcitations: Citations for knitr markdown files. R package version 1.0.4. 2014. URL: https://github.com/cboettig/knitcitations.

[3] L. Collado-Torres, A. C. Frazee, A. E. Jaffe and J. T. Leek. derfinder: Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution. https://github.com/lcolladotor/derfinder - R package version 1.0.10. 2014. URL: http://www.bioconductor.org/packages/release/bioc/html/derfinder.html.

[4] L. Collado-Torres, A. E. Jaffe and J. T. Leek. regionReport: Generate HTML reports for exploring a set of regions. https://github.com/lcolladotor/regionReport - R package version 1.0.4. 2014. URL: http://www.bioconductor.org/packages/release/bioc/html/regionReport.html.

[5] J. Hester. knitrBootstrap: Knitr Bootstrap framework. R package version 1.0.0. 2014. URL: https://github.com/jimhester/.

[6] H. Wickham. ggplot2: elegant graphics for data analysis. Springer New York, 2009. ISBN: 978-0-387-98140-6. URL: http://had.co.nz/ggplot2/book.

[7] Y. Xie. “knitr: A Comprehensive Tool for Reproducible Research in R”. In: Implementing Reproducible Computational Research. Ed. by V. Stodden, F. Leisch and R. D. Peng. ISBN 978-1466561595. Chapman and Hall/CRC, 2014. URL: http://www.crcpress.com/product/isbn/9781466561595.

[8] T. Yin, D. Cook and M. Lawrence. “ggbio: an R package for extending the grammar of graphics for genomic data”. In: Genome Biology 13.8 (2012), p. R77.